Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1809 and HP15_1810 are separated by 1 nucleotides HP15_1810 and HP15_1811 are separated by 65 nucleotides HP15_1811 and HP15_1812 are separated by 71 nucleotides
HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727
_1809
HP15_1810: HP15_1810 - peptide ABC transporter, ATP-binding protein, at 1,903,729 to 1,905,333
_1810
HP15_1811: HP15_1811 - short-chain dehydrogenase/reductase SDR, at 1,905,399 to 1,906,184
_1811
HP15_1812: HP15_1812 - type IV pilus assembly PilZ, at 1,906,256 to 1,906,699
_1812
Position (kb)
1903
1904
1905
1906 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1902.833 kb on + strand, within HP15_1809 at 1903.059 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.197 kb on - strand, within HP15_1809 at 1903.255 kb on - strand, within HP15_1809 at 1903.422 kb on + strand, within HP15_1809 at 1903.466 kb on + strand, within HP15_1809 at 1903.527 kb on + strand, within HP15_1809 at 1903.601 kb on + strand, within HP15_1809 at 1903.621 kb on + strand, within HP15_1809 at 1903.729 kb on - strand at 1903.983 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.310 kb on + strand, within HP15_1810 at 1904.342 kb on - strand, within HP15_1810 at 1904.369 kb on + strand, within HP15_1810 at 1904.464 kb on - strand, within HP15_1810 at 1904.482 kb on - strand, within HP15_1810 at 1904.730 kb on + strand, within HP15_1810 at 1904.766 kb on - strand, within HP15_1810 at 1905.039 kb on - strand, within HP15_1810 at 1905.122 kb on - strand, within HP15_1810 at 1905.122 kb on - strand, within HP15_1810 at 1905.124 kb on + strand, within HP15_1810 at 1905.127 kb on - strand, within HP15_1810 at 1906.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,902,833 + HP15_1809 0.13 -0.9 1,903,059 + HP15_1809 0.35 -1.2 1,903,144 + HP15_1809 0.43 -0.4 1,903,144 + HP15_1809 0.43 +0.7 1,903,152 - HP15_1809 0.44 -2.1 1,903,152 - HP15_1809 0.44 -1.2 1,903,197 - HP15_1809 0.48 -2.1 1,903,255 - HP15_1809 0.54 -0.6 1,903,422 + HP15_1809 0.70 -0.2 1,903,466 + HP15_1809 0.75 -0.0 1,903,527 + HP15_1809 0.80 -0.9 1,903,601 + HP15_1809 0.88 +3.8 1,903,621 + HP15_1809 0.90 -1.5 1,903,729 - -0.2 1,903,983 - HP15_1810 0.16 -0.7 1,904,043 - HP15_1810 0.20 -0.9 1,904,043 - HP15_1810 0.20 -0.3 1,904,117 + HP15_1810 0.24 -1.0 1,904,117 + HP15_1810 0.24 -4.7 1,904,125 - HP15_1810 0.25 -0.5 1,904,125 - HP15_1810 0.25 -1.6 1,904,125 - HP15_1810 0.25 -0.6 1,904,310 + HP15_1810 0.36 -0.2 1,904,342 - HP15_1810 0.38 -0.7 1,904,369 + HP15_1810 0.40 -1.0 1,904,464 - HP15_1810 0.46 -1.0 1,904,482 - HP15_1810 0.47 -0.5 1,904,730 + HP15_1810 0.62 +1.4 1,904,766 - HP15_1810 0.65 +4.7 1,905,039 - HP15_1810 0.82 -3.0 1,905,122 - HP15_1810 0.87 -0.7 1,905,122 - HP15_1810 0.87 -0.4 1,905,124 + HP15_1810 0.87 -0.9 1,905,127 - HP15_1810 0.87 -1.2 1,906,262 - +0.4
Or see this region's nucleotide sequence