Strain Fitness in Marinobacter adhaerens HP15 around HP15_1696

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1694 and HP15_1695 are separated by 110 nucleotidesHP15_1695 and HP15_1696 are separated by 183 nucleotidesHP15_1696 and HP15_1697 are separated by 2 nucleotides HP15_1694: HP15_1694 - conserved hypothetical protein, at 1,783,983 to 1,785,311 _1694 HP15_1695: HP15_1695 - protein containing zinc finger, DksA/TraR C4-type domain, at 1,785,422 to 1,785,688 _1695 HP15_1696: HP15_1696 - transcriptional regulator, MerR family, at 1,785,872 to 1,786,288 _1696 HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217 _1697 Position (kb) 1785 1786 1787Strain fitness (log2 ratio) -2 -1 0 1at 1785.108 kb on + strand, within HP15_1694at 1785.119 kb on + strand, within HP15_1694at 1785.202 kb on + strandat 1785.507 kb on + strand, within HP15_1695at 1785.516 kb on - strand, within HP15_1695at 1785.688 kb on + strandat 1786.023 kb on - strand, within HP15_1696at 1786.057 kb on + strand, within HP15_1696at 1786.065 kb on - strand, within HP15_1696at 1786.198 kb on - strand, within HP15_1696at 1786.274 kb on - strandat 1786.289 kb on + strandat 1786.295 kb on - strandat 1786.295 kb on - strandat 1786.385 kb on - strand, within HP15_1697at 1786.417 kb on - strand, within HP15_1697at 1786.449 kb on - strand, within HP15_1697at 1786.511 kb on + strand, within HP15_1697at 1786.545 kb on - strand, within HP15_1697at 1786.614 kb on + strand, within HP15_1697at 1786.614 kb on + strand, within HP15_1697at 1786.614 kb on + strand, within HP15_1697at 1786.622 kb on - strand, within HP15_1697at 1786.682 kb on - strand, within HP15_1697at 1786.968 kb on - strand, within HP15_1697at 1787.079 kb on - strand, within HP15_1697at 1787.235 kb on + strandat 1787.260 kb on + strandat 1787.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,785,108 + HP15_1694 0.85 -0.6
1,785,119 + HP15_1694 0.85 +1.4
1,785,202 + -0.4
1,785,507 + HP15_1695 0.32 +0.1
1,785,516 - HP15_1695 0.35 -1.5
1,785,688 + +0.1
1,786,023 - HP15_1696 0.36 -1.9
1,786,057 + HP15_1696 0.44 -1.2
1,786,065 - HP15_1696 0.46 -0.6
1,786,198 - HP15_1696 0.78 +0.9
1,786,274 - +0.3
1,786,289 + -0.5
1,786,295 - -1.1
1,786,295 - +0.2
1,786,385 - HP15_1697 0.10 +0.4
1,786,417 - HP15_1697 0.14 -0.2
1,786,449 - HP15_1697 0.17 -0.1
1,786,511 + HP15_1697 0.24 +0.1
1,786,545 - HP15_1697 0.27 +1.6
1,786,614 + HP15_1697 0.35 +0.4
1,786,614 + HP15_1697 0.35 +0.1
1,786,614 + HP15_1697 0.35 -0.6
1,786,622 - HP15_1697 0.36 +0.2
1,786,682 - HP15_1697 0.42 +0.1
1,786,968 - HP15_1697 0.73 +0.0
1,787,079 - HP15_1697 0.85 +0.1
1,787,235 + -0.3
1,787,260 + -0.0
1,787,269 + +0.3

Or see this region's nucleotide sequence