Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1681 and HP15_1682 are separated by 48 nucleotides HP15_1682 and HP15_1683 are separated by 229 nucleotides HP15_1683 and HP15_1684 are separated by 31 nucleotides HP15_1684 and HP15_1685 are separated by 13 nucleotides
HP15_1681: HP15_1681 - hypothetical protein, at 1,769,453 to 1,769,599
_1681
HP15_1682: HP15_1682 - hypothetical protein, at 1,769,648 to 1,769,761
_1682
HP15_1683: HP15_1683 - integron gene cassette protein, at 1,769,991 to 1,770,353
_1683
HP15_1684: HP15_1684 - conserved hypothetical protein, secreted, at 1,770,385 to 1,770,783
_1684
HP15_1685: HP15_1685 - NAD(P)H dehydrogenase (quinone), at 1,770,797 to 1,771,387
_1685
Position (kb)
1769
1770
1771 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1769.061 kb on - strand at 1769.357 kb on + strand at 1769.364 kb on + strand at 1769.372 kb on - strand at 1769.437 kb on + strand at 1769.454 kb on + strand at 1769.490 kb on + strand, within HP15_1681 at 1769.490 kb on + strand, within HP15_1681 at 1769.525 kb on + strand, within HP15_1681 at 1769.526 kb on + strand, within HP15_1681 at 1769.541 kb on + strand, within HP15_1681 at 1769.550 kb on - strand, within HP15_1681 at 1769.592 kb on + strand at 1769.641 kb on - strand at 1769.767 kb on + strand at 1769.804 kb on - strand at 1769.806 kb on - strand at 1769.830 kb on - strand at 1769.869 kb on + strand at 1769.919 kb on + strand at 1769.927 kb on - strand at 1769.927 kb on - strand at 1769.930 kb on - strand at 1770.136 kb on + strand, within HP15_1683 at 1770.138 kb on - strand, within HP15_1683 at 1770.197 kb on + strand, within HP15_1683 at 1770.255 kb on + strand, within HP15_1683 at 1770.308 kb on + strand, within HP15_1683 at 1770.316 kb on - strand, within HP15_1683 at 1770.331 kb on - strand at 1770.331 kb on - strand at 1770.396 kb on - strand at 1770.467 kb on + strand, within HP15_1684 at 1770.467 kb on + strand, within HP15_1684 at 1770.467 kb on + strand, within HP15_1684 at 1770.614 kb on - strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.664 kb on + strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.700 kb on - strand, within HP15_1684 at 1770.802 kb on - strand at 1770.802 kb on - strand at 1770.803 kb on + strand at 1771.106 kb on - strand, within HP15_1685 at 1771.118 kb on - strand, within HP15_1685 at 1771.123 kb on - strand, within HP15_1685 at 1771.128 kb on + strand, within HP15_1685 at 1771.128 kb on - strand, within HP15_1685 at 1771.136 kb on - strand, within HP15_1685 at 1771.136 kb on - strand, within HP15_1685 at 1771.158 kb on + strand, within HP15_1685 at 1771.166 kb on - strand, within HP15_1685 at 1771.282 kb on + strand, within HP15_1685 at 1771.308 kb on + strand, within HP15_1685
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,769,061 - +0.9 1,769,357 + +1.1 1,769,364 + -0.6 1,769,372 - -1.2 1,769,437 + -1.2 1,769,454 + +0.1 1,769,490 + HP15_1681 0.25 -0.1 1,769,490 + HP15_1681 0.25 +0.1 1,769,525 + HP15_1681 0.49 +1.0 1,769,526 + HP15_1681 0.50 -0.2 1,769,541 + HP15_1681 0.60 -1.3 1,769,550 - HP15_1681 0.66 +0.3 1,769,592 + +0.3 1,769,641 - -0.9 1,769,767 + +0.7 1,769,804 - -0.4 1,769,806 - -0.5 1,769,830 - +0.4 1,769,869 + -0.9 1,769,919 + -1.1 1,769,927 - +1.1 1,769,927 - -1.0 1,769,930 - -0.0 1,770,136 + HP15_1683 0.40 +0.3 1,770,138 - HP15_1683 0.40 +0.1 1,770,197 + HP15_1683 0.57 -0.7 1,770,255 + HP15_1683 0.73 -0.1 1,770,308 + HP15_1683 0.87 +0.8 1,770,316 - HP15_1683 0.90 +0.3 1,770,331 - -0.7 1,770,331 - +1.0 1,770,396 - -1.3 1,770,467 + HP15_1684 0.21 +0.1 1,770,467 + HP15_1684 0.21 -1.6 1,770,467 + HP15_1684 0.21 -0.3 1,770,614 - HP15_1684 0.57 +0.7 1,770,662 + HP15_1684 0.69 +0.1 1,770,662 + HP15_1684 0.69 -0.5 1,770,662 + HP15_1684 0.69 -0.3 1,770,664 + HP15_1684 0.70 +0.1 1,770,670 - HP15_1684 0.71 +0.1 1,770,670 - HP15_1684 0.71 -0.1 1,770,670 - HP15_1684 0.71 -0.1 1,770,687 + HP15_1684 0.76 +0.1 1,770,687 + HP15_1684 0.76 -0.3 1,770,700 - HP15_1684 0.79 +0.4 1,770,802 - +0.5 1,770,802 - +0.1 1,770,803 + -0.7 1,771,106 - HP15_1685 0.52 +0.3 1,771,118 - HP15_1685 0.54 +0.3 1,771,123 - HP15_1685 0.55 +3.9 1,771,128 + HP15_1685 0.56 +0.3 1,771,128 - HP15_1685 0.56 -0.0 1,771,136 - HP15_1685 0.57 +0.5 1,771,136 - HP15_1685 0.57 -0.0 1,771,158 + HP15_1685 0.61 -0.9 1,771,166 - HP15_1685 0.62 -0.1 1,771,282 + HP15_1685 0.82 -1.9 1,771,308 + HP15_1685 0.86 -0.3
Or see this region's nucleotide sequence