Strain Fitness in Marinobacter adhaerens HP15 around HP15_1683

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1681 and HP15_1682 are separated by 48 nucleotidesHP15_1682 and HP15_1683 are separated by 229 nucleotidesHP15_1683 and HP15_1684 are separated by 31 nucleotidesHP15_1684 and HP15_1685 are separated by 13 nucleotides HP15_1681: HP15_1681 - hypothetical protein, at 1,769,453 to 1,769,599 _1681 HP15_1682: HP15_1682 - hypothetical protein, at 1,769,648 to 1,769,761 _1682 HP15_1683: HP15_1683 - integron gene cassette protein, at 1,769,991 to 1,770,353 _1683 HP15_1684: HP15_1684 - conserved hypothetical protein, secreted, at 1,770,385 to 1,770,783 _1684 HP15_1685: HP15_1685 - NAD(P)H dehydrogenase (quinone), at 1,770,797 to 1,771,387 _1685 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1769.061 kb on - strandat 1769.357 kb on + strandat 1769.364 kb on + strandat 1769.372 kb on - strandat 1769.437 kb on + strandat 1769.454 kb on + strandat 1769.490 kb on + strand, within HP15_1681at 1769.490 kb on + strand, within HP15_1681at 1769.525 kb on + strand, within HP15_1681at 1769.526 kb on + strand, within HP15_1681at 1769.541 kb on + strand, within HP15_1681at 1769.550 kb on - strand, within HP15_1681at 1769.592 kb on + strandat 1769.641 kb on - strandat 1769.767 kb on + strandat 1769.804 kb on - strandat 1769.806 kb on - strandat 1769.830 kb on - strandat 1769.869 kb on + strandat 1769.919 kb on + strandat 1769.927 kb on - strandat 1769.927 kb on - strandat 1769.930 kb on - strandat 1770.136 kb on + strand, within HP15_1683at 1770.138 kb on - strand, within HP15_1683at 1770.197 kb on + strand, within HP15_1683at 1770.255 kb on + strand, within HP15_1683at 1770.308 kb on + strand, within HP15_1683at 1770.316 kb on - strand, within HP15_1683at 1770.331 kb on - strandat 1770.331 kb on - strandat 1770.396 kb on - strandat 1770.467 kb on + strand, within HP15_1684at 1770.467 kb on + strand, within HP15_1684at 1770.467 kb on + strand, within HP15_1684at 1770.614 kb on - strand, within HP15_1684at 1770.662 kb on + strand, within HP15_1684at 1770.662 kb on + strand, within HP15_1684at 1770.662 kb on + strand, within HP15_1684at 1770.664 kb on + strand, within HP15_1684at 1770.670 kb on - strand, within HP15_1684at 1770.670 kb on - strand, within HP15_1684at 1770.670 kb on - strand, within HP15_1684at 1770.687 kb on + strand, within HP15_1684at 1770.687 kb on + strand, within HP15_1684at 1770.700 kb on - strand, within HP15_1684at 1770.802 kb on - strandat 1770.802 kb on - strandat 1770.803 kb on + strandat 1771.106 kb on - strand, within HP15_1685at 1771.118 kb on - strand, within HP15_1685at 1771.123 kb on - strand, within HP15_1685at 1771.128 kb on + strand, within HP15_1685at 1771.128 kb on - strand, within HP15_1685at 1771.136 kb on - strand, within HP15_1685at 1771.136 kb on - strand, within HP15_1685at 1771.158 kb on + strand, within HP15_1685at 1771.166 kb on - strand, within HP15_1685at 1771.282 kb on + strand, within HP15_1685at 1771.308 kb on + strand, within HP15_1685

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,769,061 - +0.9
1,769,357 + +1.1
1,769,364 + -0.6
1,769,372 - -1.2
1,769,437 + -1.2
1,769,454 + +0.1
1,769,490 + HP15_1681 0.25 -0.1
1,769,490 + HP15_1681 0.25 +0.1
1,769,525 + HP15_1681 0.49 +1.0
1,769,526 + HP15_1681 0.50 -0.2
1,769,541 + HP15_1681 0.60 -1.3
1,769,550 - HP15_1681 0.66 +0.3
1,769,592 + +0.3
1,769,641 - -0.9
1,769,767 + +0.7
1,769,804 - -0.4
1,769,806 - -0.5
1,769,830 - +0.4
1,769,869 + -0.9
1,769,919 + -1.1
1,769,927 - +1.1
1,769,927 - -1.0
1,769,930 - -0.0
1,770,136 + HP15_1683 0.40 +0.3
1,770,138 - HP15_1683 0.40 +0.1
1,770,197 + HP15_1683 0.57 -0.7
1,770,255 + HP15_1683 0.73 -0.1
1,770,308 + HP15_1683 0.87 +0.8
1,770,316 - HP15_1683 0.90 +0.3
1,770,331 - -0.7
1,770,331 - +1.0
1,770,396 - -1.3
1,770,467 + HP15_1684 0.21 +0.1
1,770,467 + HP15_1684 0.21 -1.6
1,770,467 + HP15_1684 0.21 -0.3
1,770,614 - HP15_1684 0.57 +0.7
1,770,662 + HP15_1684 0.69 +0.1
1,770,662 + HP15_1684 0.69 -0.5
1,770,662 + HP15_1684 0.69 -0.3
1,770,664 + HP15_1684 0.70 +0.1
1,770,670 - HP15_1684 0.71 +0.1
1,770,670 - HP15_1684 0.71 -0.1
1,770,670 - HP15_1684 0.71 -0.1
1,770,687 + HP15_1684 0.76 +0.1
1,770,687 + HP15_1684 0.76 -0.3
1,770,700 - HP15_1684 0.79 +0.4
1,770,802 - +0.5
1,770,802 - +0.1
1,770,803 + -0.7
1,771,106 - HP15_1685 0.52 +0.3
1,771,118 - HP15_1685 0.54 +0.3
1,771,123 - HP15_1685 0.55 +3.9
1,771,128 + HP15_1685 0.56 +0.3
1,771,128 - HP15_1685 0.56 -0.0
1,771,136 - HP15_1685 0.57 +0.5
1,771,136 - HP15_1685 0.57 -0.0
1,771,158 + HP15_1685 0.61 -0.9
1,771,166 - HP15_1685 0.62 -0.1
1,771,282 + HP15_1685 0.82 -1.9
1,771,308 + HP15_1685 0.86 -0.3

Or see this region's nucleotide sequence