Strain Fitness in Marinobacter adhaerens HP15 around HP15_1653

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1652 and HP15_1653 are separated by 242 nucleotidesHP15_1653 and HP15_1654 are separated by 46 nucleotidesHP15_1654 and HP15_1655 are separated by 225 nucleotides HP15_1652: HP15_1652 - disulfide isomerase/thiol-disulfide oxidase-like protein, at 1,748,603 to 1,749,370 _1652 HP15_1653: HP15_1653 - protein containing DUF1348, at 1,749,613 to 1,750,083 _1653 HP15_1654: HP15_1654 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 1,750,130 to 1,750,690 _1654 HP15_1655: HP15_1655 - transcriptional regulator, TetR family, at 1,750,916 to 1,751,485 _1655 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 1748.633 kb on + strandat 1748.741 kb on + strand, within HP15_1652at 1748.748 kb on + strand, within HP15_1652at 1748.749 kb on - strand, within HP15_1652at 1748.769 kb on + strand, within HP15_1652at 1748.906 kb on + strand, within HP15_1652at 1748.947 kb on + strand, within HP15_1652at 1749.088 kb on + strand, within HP15_1652at 1749.177 kb on - strand, within HP15_1652at 1749.247 kb on + strand, within HP15_1652at 1749.404 kb on + strandat 1749.651 kb on + strandat 1749.839 kb on + strand, within HP15_1653at 1749.973 kb on - strand, within HP15_1653at 1749.990 kb on + strand, within HP15_1653at 1750.087 kb on - strandat 1750.087 kb on - strandat 1750.123 kb on + strandat 1750.131 kb on - strandat 1750.133 kb on + strandat 1750.171 kb on - strandat 1750.204 kb on + strand, within HP15_1654at 1750.204 kb on - strand, within HP15_1654at 1750.221 kb on - strand, within HP15_1654at 1750.356 kb on - strand, within HP15_1654at 1750.383 kb on - strand, within HP15_1654at 1750.598 kb on - strand, within HP15_1654at 1750.635 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.810 kb on - strandat 1750.891 kb on - strandat 1751.058 kb on + strand, within HP15_1655

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,748,633 + +0.4
1,748,741 + HP15_1652 0.18 -0.7
1,748,748 + HP15_1652 0.19 -0.4
1,748,749 - HP15_1652 0.19 +0.1
1,748,769 + HP15_1652 0.22 -0.5
1,748,906 + HP15_1652 0.39 -0.2
1,748,947 + HP15_1652 0.45 +0.1
1,749,088 + HP15_1652 0.63 -0.9
1,749,177 - HP15_1652 0.75 -0.8
1,749,247 + HP15_1652 0.84 -0.6
1,749,404 + +0.0
1,749,651 + -0.3
1,749,839 + HP15_1653 0.48 +3.8
1,749,973 - HP15_1653 0.76 +1.2
1,749,990 + HP15_1653 0.80 -0.2
1,750,087 - +2.3
1,750,087 - +0.1
1,750,123 + -0.1
1,750,131 - +0.7
1,750,133 + -1.3
1,750,171 - +0.5
1,750,204 + HP15_1654 0.13 -0.6
1,750,204 - HP15_1654 0.13 +1.3
1,750,221 - HP15_1654 0.16 +0.9
1,750,356 - HP15_1654 0.40 +0.3
1,750,383 - HP15_1654 0.45 +0.6
1,750,598 - HP15_1654 0.83 -0.7
1,750,635 + +0.4
1,750,802 + -0.1
1,750,802 + -0.9
1,750,802 + +0.7
1,750,802 + -0.6
1,750,810 - +2.9
1,750,891 - +3.5
1,751,058 + HP15_1655 0.25 +7.8

Or see this region's nucleotide sequence