Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1638 and HP15_1639 are separated by 5 nucleotides HP15_1639 and HP15_1640 are separated by 181 nucleotides HP15_1640 and HP15_1641 are separated by 77 nucleotides HP15_1641 and HP15_1642 are separated by 68 nucleotides
HP15_1638: HP15_1638 - protein containing pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain, at 1,738,641 to 1,739,210
_1638
HP15_1639: HP15_1639 - MarR family transcriptional regulator-like protein, at 1,739,216 to 1,739,677
_1639
HP15_1640: HP15_1640 - transcriptional regulator, LysR family protein, at 1,739,859 to 1,740,839
_1640
HP15_1641: HP15_1641 - secreted protein, at 1,740,917 to 1,741,087
_1641
HP15_1642: HP15_1642 - transcriptional Regulator, AraC family protein, at 1,741,156 to 1,742,025
_1642
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1738.867 kb on + strand, within HP15_1638 at 1739.009 kb on + strand, within HP15_1638 at 1739.040 kb on - strand, within HP15_1638 at 1739.112 kb on - strand, within HP15_1638 at 1739.141 kb on + strand, within HP15_1638 at 1739.141 kb on + strand, within HP15_1638 at 1739.143 kb on + strand, within HP15_1638 at 1739.149 kb on - strand, within HP15_1638 at 1739.151 kb on - strand, within HP15_1638 at 1739.157 kb on - strand at 1739.180 kb on + strand at 1739.266 kb on + strand, within HP15_1639 at 1739.496 kb on - strand, within HP15_1639 at 1739.537 kb on - strand, within HP15_1639 at 1739.539 kb on + strand, within HP15_1639 at 1739.759 kb on - strand at 1739.894 kb on - strand at 1739.957 kb on - strand, within HP15_1640 at 1740.056 kb on - strand, within HP15_1640 at 1740.382 kb on + strand, within HP15_1640 at 1740.382 kb on + strand, within HP15_1640 at 1740.437 kb on - strand, within HP15_1640 at 1740.470 kb on - strand, within HP15_1640 at 1740.483 kb on + strand, within HP15_1640 at 1740.491 kb on - strand, within HP15_1640 at 1740.493 kb on + strand, within HP15_1640 at 1740.501 kb on - strand, within HP15_1640 at 1740.511 kb on + strand, within HP15_1640 at 1740.669 kb on + strand, within HP15_1640 at 1740.874 kb on - strand at 1741.198 kb on + strand at 1741.304 kb on - strand, within HP15_1642 at 1741.304 kb on - strand, within HP15_1642 at 1741.363 kb on + strand, within HP15_1642 at 1741.371 kb on - strand, within HP15_1642 at 1741.429 kb on + strand, within HP15_1642 at 1741.487 kb on - strand, within HP15_1642 at 1741.495 kb on + strand, within HP15_1642 at 1741.495 kb on + strand, within HP15_1642 at 1741.503 kb on - strand, within HP15_1642 at 1741.542 kb on - strand, within HP15_1642 at 1741.602 kb on - strand, within HP15_1642 at 1741.603 kb on - strand, within HP15_1642 at 1741.620 kb on + strand, within HP15_1642 at 1741.648 kb on - strand, within HP15_1642 at 1741.682 kb on - strand, within HP15_1642 at 1741.704 kb on + strand at 1741.722 kb on - strand, within HP15_1642 at 1741.726 kb on + strand, within HP15_1642 at 1741.731 kb on + strand, within HP15_1642 at 1741.749 kb on - strand, within HP15_1642 at 1741.807 kb on + strand, within HP15_1642 at 1741.807 kb on - strand, within HP15_1642
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,738,867 + HP15_1638 0.40 -0.1 1,739,009 + HP15_1638 0.65 -1.1 1,739,040 - HP15_1638 0.70 -0.9 1,739,112 - HP15_1638 0.83 +1.7 1,739,141 + HP15_1638 0.88 +0.4 1,739,141 + HP15_1638 0.88 -1.2 1,739,143 + HP15_1638 0.88 +0.3 1,739,149 - HP15_1638 0.89 -1.3 1,739,151 - HP15_1638 0.89 -0.8 1,739,157 - +0.4 1,739,180 + +0.3 1,739,266 + HP15_1639 0.11 +3.1 1,739,496 - HP15_1639 0.61 -0.9 1,739,537 - HP15_1639 0.69 +0.7 1,739,539 + HP15_1639 0.70 -0.2 1,739,759 - +0.1 1,739,894 - -0.5 1,739,957 - HP15_1640 0.10 +0.9 1,740,056 - HP15_1640 0.20 +4.4 1,740,382 + HP15_1640 0.53 +1.4 1,740,382 + HP15_1640 0.53 -0.8 1,740,437 - HP15_1640 0.59 +0.3 1,740,470 - HP15_1640 0.62 +1.2 1,740,483 + HP15_1640 0.64 +0.1 1,740,491 - HP15_1640 0.64 +2.3 1,740,493 + HP15_1640 0.65 +0.8 1,740,501 - HP15_1640 0.65 -1.8 1,740,511 + HP15_1640 0.66 -1.2 1,740,669 + HP15_1640 0.83 -0.8 1,740,874 - +0.1 1,741,198 + +0.1 1,741,304 - HP15_1642 0.17 -1.2 1,741,304 - HP15_1642 0.17 -0.2 1,741,363 + HP15_1642 0.24 -0.1 1,741,371 - HP15_1642 0.25 -0.1 1,741,429 + HP15_1642 0.31 -0.9 1,741,487 - HP15_1642 0.38 -0.3 1,741,495 + HP15_1642 0.39 -1.9 1,741,495 + HP15_1642 0.39 -0.1 1,741,503 - HP15_1642 0.40 -1.3 1,741,542 - HP15_1642 0.44 +0.2 1,741,602 - HP15_1642 0.51 +0.7 1,741,603 - HP15_1642 0.51 -3.3 1,741,620 + HP15_1642 0.53 -0.2 1,741,648 - HP15_1642 0.57 -0.1 1,741,682 - HP15_1642 0.60 +0.1 1,741,704 + -1.2 1,741,722 - HP15_1642 0.65 -0.4 1,741,726 + HP15_1642 0.66 +0.3 1,741,731 + HP15_1642 0.66 +0.7 1,741,749 - HP15_1642 0.68 -0.9 1,741,807 + HP15_1642 0.75 +0.4 1,741,807 - HP15_1642 0.75 +0.7
Or see this region's nucleotide sequence