Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1621 and HP15_1622 are separated by 100 nucleotides HP15_1622 and HP15_1623 overlap by 4 nucleotides
HP15_1621: HP15_1621 - transcriptional regulator, LysR family protein, at 1,718,034 to 1,718,945
_1621
HP15_1622: HP15_1622 - NADH dehydrogenase subunit L, at 1,719,046 to 1,720,665
_1622
HP15_1623: HP15_1623 - conserved hypothetical protein, at 1,720,662 to 1,723,118
_1623
Position (kb)
1719
1720
1721 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1718.137 kb on + strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.155 kb on - strand, within HP15_1621 at 1718.177 kb on + strand, within HP15_1621 at 1718.316 kb on - strand, within HP15_1621 at 1718.419 kb on - strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.530 kb on + strand, within HP15_1621 at 1718.579 kb on + strand, within HP15_1621 at 1718.663 kb on - strand, within HP15_1621 at 1718.779 kb on - strand, within HP15_1621 at 1719.158 kb on + strand at 1719.195 kb on + strand at 1719.279 kb on - strand, within HP15_1622 at 1719.308 kb on - strand, within HP15_1622 at 1719.364 kb on - strand, within HP15_1622 at 1719.422 kb on + strand, within HP15_1622 at 1719.500 kb on + strand, within HP15_1622 at 1719.506 kb on + strand, within HP15_1622 at 1719.530 kb on + strand, within HP15_1622 at 1719.611 kb on + strand, within HP15_1622 at 1719.611 kb on + strand, within HP15_1622 at 1719.655 kb on - strand, within HP15_1622 at 1719.657 kb on + strand, within HP15_1622 at 1719.672 kb on + strand, within HP15_1622 at 1719.771 kb on + strand, within HP15_1622 at 1719.817 kb on - strand, within HP15_1622 at 1719.817 kb on - strand, within HP15_1622 at 1719.827 kb on - strand, within HP15_1622 at 1719.961 kb on - strand, within HP15_1622 at 1720.010 kb on + strand, within HP15_1622 at 1720.038 kb on + strand at 1720.080 kb on + strand, within HP15_1622 at 1720.178 kb on - strand, within HP15_1622 at 1720.427 kb on + strand, within HP15_1622 at 1720.514 kb on + strand at 1720.628 kb on - strand at 1720.689 kb on + strand at 1720.723 kb on - strand at 1720.774 kb on + strand at 1720.780 kb on - strand at 1720.856 kb on + strand at 1720.859 kb on - strand at 1720.892 kb on + strand at 1721.010 kb on + strand, within HP15_1623 at 1721.028 kb on - strand, within HP15_1623 at 1721.028 kb on - strand, within HP15_1623 at 1721.093 kb on - strand, within HP15_1623 at 1721.233 kb on + strand, within HP15_1623 at 1721.242 kb on - strand, within HP15_1623 at 1721.281 kb on - strand, within HP15_1623 at 1721.289 kb on + strand, within HP15_1623 at 1721.333 kb on - strand, within HP15_1623 at 1721.344 kb on + strand, within HP15_1623 at 1721.352 kb on - strand, within HP15_1623 at 1721.362 kb on - strand, within HP15_1623 at 1721.409 kb on + strand, within HP15_1623 at 1721.481 kb on - strand, within HP15_1623 at 1721.486 kb on - strand, within HP15_1623 at 1721.492 kb on - strand, within HP15_1623
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,718,137 + HP15_1621 0.11 -0.7 1,718,145 - HP15_1621 0.12 -1.1 1,718,145 - HP15_1621 0.12 +0.5 1,718,155 - HP15_1621 0.13 +0.4 1,718,177 + HP15_1621 0.16 +0.6 1,718,316 - HP15_1621 0.31 +0.4 1,718,419 - HP15_1621 0.42 +0.4 1,718,511 + HP15_1621 0.52 -0.8 1,718,511 + HP15_1621 0.52 -0.3 1,718,530 + HP15_1621 0.54 -0.8 1,718,579 + HP15_1621 0.60 -0.0 1,718,663 - HP15_1621 0.69 -0.5 1,718,779 - HP15_1621 0.82 -0.5 1,719,158 + +1.4 1,719,195 + -0.3 1,719,279 - HP15_1622 0.14 -0.1 1,719,308 - HP15_1622 0.16 -0.9 1,719,364 - HP15_1622 0.20 -0.1 1,719,422 + HP15_1622 0.23 -0.9 1,719,500 + HP15_1622 0.28 -1.1 1,719,506 + HP15_1622 0.28 -2.2 1,719,530 + HP15_1622 0.30 -0.9 1,719,611 + HP15_1622 0.35 -0.1 1,719,611 + HP15_1622 0.35 -2.2 1,719,655 - HP15_1622 0.38 +1.9 1,719,657 + HP15_1622 0.38 -1.1 1,719,672 + HP15_1622 0.39 -1.8 1,719,771 + HP15_1622 0.45 +0.7 1,719,817 - HP15_1622 0.48 +0.2 1,719,817 - HP15_1622 0.48 -2.2 1,719,827 - HP15_1622 0.48 -2.1 1,719,961 - HP15_1622 0.56 -0.5 1,720,010 + HP15_1622 0.60 +0.7 1,720,038 + +0.1 1,720,080 + HP15_1622 0.64 +0.2 1,720,178 - HP15_1622 0.70 -0.3 1,720,427 + HP15_1622 0.85 -0.9 1,720,514 + +0.1 1,720,628 - +0.2 1,720,689 + -1.8 1,720,723 - -1.5 1,720,774 + -0.9 1,720,780 - -0.3 1,720,856 + -0.1 1,720,859 - -0.2 1,720,892 + +0.7 1,721,010 + HP15_1623 0.14 -0.7 1,721,028 - HP15_1623 0.15 -0.2 1,721,028 - HP15_1623 0.15 +0.2 1,721,093 - HP15_1623 0.18 -0.9 1,721,233 + HP15_1623 0.23 -1.2 1,721,242 - HP15_1623 0.24 +2.1 1,721,281 - HP15_1623 0.25 -1.3 1,721,289 + HP15_1623 0.26 +1.7 1,721,333 - HP15_1623 0.27 -0.2 1,721,344 + HP15_1623 0.28 -0.2 1,721,352 - HP15_1623 0.28 +1.1 1,721,362 - HP15_1623 0.28 -1.5 1,721,409 + HP15_1623 0.30 +0.1 1,721,481 - HP15_1623 0.33 +1.1 1,721,486 - HP15_1623 0.34 +0.3 1,721,492 - HP15_1623 0.34 -1.9
Or see this region's nucleotide sequence