Strain Fitness in Marinobacter adhaerens HP15 around HP15_1239

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1238 and HP15_1239 are separated by 275 nucleotidesHP15_1239 and HP15_1240 are separated by 416 nucleotidesHP15_1240 and HP15_1241 are separated by 9 nucleotides HP15_1238: HP15_1238 - transglycosylase, Slt family protein, at 1,288,695 to 1,290,215 _1238 HP15_1239: HP15_1239 - phosphoribosylformylglycinamidine synthase, at 1,290,491 to 1,294,396 _1239 HP15_1240: HP15_1240 - conserved hypothetical protein, at 1,294,813 to 1,295,124 _1240 HP15_1241: HP15_1241 - ADP-ribose pyrophosphatase, at 1,295,134 to 1,295,685 _1241 Position (kb) 1290 1291 1292 1293 1294 1295Strain fitness (log2 ratio) -3 -2 -1 0 1at 1289.508 kb on - strand, within HP15_1238at 1289.508 kb on - strand, within HP15_1238at 1289.553 kb on + strand, within HP15_1238at 1289.580 kb on - strand, within HP15_1238at 1289.672 kb on + strand, within HP15_1238at 1289.672 kb on + strand, within HP15_1238at 1289.738 kb on - strand, within HP15_1238at 1289.740 kb on - strand, within HP15_1238at 1289.796 kb on - strand, within HP15_1238at 1289.796 kb on - strand, within HP15_1238at 1289.877 kb on + strand, within HP15_1238at 1289.880 kb on - strand, within HP15_1238at 1289.972 kb on + strand, within HP15_1238at 1289.972 kb on + strand, within HP15_1238at 1289.980 kb on - strand, within HP15_1238at 1290.112 kb on + strandat 1290.112 kb on + strandat 1290.112 kb on + strandat 1290.112 kb on + strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.120 kb on - strandat 1290.151 kb on - strandat 1290.261 kb on - strandat 1290.268 kb on + strandat 1290.280 kb on - strandat 1290.285 kb on - strandat 1290.315 kb on - strandat 1290.336 kb on + strandat 1290.403 kb on + strandat 1290.416 kb on - strandat 1294.716 kb on + strandat 1294.762 kb on - strandat 1294.768 kb on + strandat 1294.837 kb on - strandat 1295.078 kb on - strand, within HP15_1240at 1295.090 kb on - strand, within HP15_1240at 1295.197 kb on + strand, within HP15_1241at 1295.323 kb on + strand, within HP15_1241at 1295.323 kb on + strand, within HP15_1241at 1295.363 kb on - strand, within HP15_1241

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
1,289,508 - HP15_1238 0.53 -0.8
1,289,508 - HP15_1238 0.53 +0.8
1,289,553 + HP15_1238 0.56 -0.2
1,289,580 - HP15_1238 0.58 -0.1
1,289,672 + HP15_1238 0.64 -0.8
1,289,672 + HP15_1238 0.64 -0.3
1,289,738 - HP15_1238 0.69 -0.7
1,289,740 - HP15_1238 0.69 -1.1
1,289,796 - HP15_1238 0.72 +0.8
1,289,796 - HP15_1238 0.72 -0.9
1,289,877 + HP15_1238 0.78 +0.4
1,289,880 - HP15_1238 0.78 -1.5
1,289,972 + HP15_1238 0.84 -0.9
1,289,972 + HP15_1238 0.84 -1.6
1,289,980 - HP15_1238 0.84 -1.5
1,290,112 + -0.3
1,290,112 + -1.5
1,290,112 + +0.4
1,290,112 + -0.3
1,290,120 - -0.0
1,290,120 - -0.2
1,290,120 - -0.5
1,290,120 - -1.7
1,290,120 - -0.7
1,290,120 - +1.4
1,290,151 - -2.4
1,290,261 - -0.2
1,290,268 + +1.7
1,290,280 - +0.3
1,290,285 - -0.3
1,290,315 - -0.9
1,290,336 + -0.2
1,290,403 + +1.1
1,290,416 - -3.2
1,294,716 + +0.2
1,294,762 - +0.5
1,294,768 + -0.0
1,294,837 - -0.7
1,295,078 - HP15_1240 0.85 -0.8
1,295,090 - HP15_1240 0.89 +0.3
1,295,197 + HP15_1241 0.11 +1.1
1,295,323 + HP15_1241 0.34 +1.1
1,295,323 + HP15_1241 0.34 +1.3
1,295,363 - HP15_1241 0.41 -0.7

Or see this region's nucleotide sequence