Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1233 and HP15_1234 are separated by 188 nucleotides HP15_1234 and HP15_1235 are separated by 13 nucleotides HP15_1235 and HP15_1236 overlap by 4 nucleotides
HP15_1233: HP15_1233 - acetyl-CoA acetyltransferase, at 1,283,888 to 1,285,096
_1233
HP15_1234: HP15_1234 - conserved hypothetical protein, at 1,285,285 to 1,285,548
_1234
HP15_1235: HP15_1235 - conserved hypothetical protein, at 1,285,562 to 1,285,900
_1235
HP15_1236: HP15_1236 - conserved hypothetical protein, at 1,285,897 to 1,288,026
_1236
Position (kb)
1285
1286 Strain fitness (log2 ratio)
-1
0
1
2 at 1284.616 kb on + strand, within HP15_1233 at 1284.616 kb on - strand, within HP15_1233 at 1284.634 kb on + strand, within HP15_1233 at 1284.637 kb on - strand, within HP15_1233 at 1284.642 kb on - strand, within HP15_1233 at 1284.655 kb on - strand, within HP15_1233 at 1284.736 kb on + strand, within HP15_1233 at 1284.744 kb on - strand, within HP15_1233 at 1284.830 kb on + strand, within HP15_1233 at 1284.843 kb on - strand, within HP15_1233 at 1284.926 kb on + strand, within HP15_1233 at 1284.939 kb on + strand, within HP15_1233 at 1284.954 kb on + strand, within HP15_1233 at 1284.960 kb on + strand, within HP15_1233 at 1284.981 kb on + strand at 1284.981 kb on - strand at 1285.010 kb on + strand at 1285.059 kb on - strand at 1285.059 kb on - strand at 1285.068 kb on + strand at 1285.085 kb on - strand at 1285.179 kb on - strand at 1285.179 kb on - strand at 1285.188 kb on + strand at 1285.274 kb on - strand at 1285.346 kb on - strand, within HP15_1234 at 1285.357 kb on - strand, within HP15_1234 at 1285.407 kb on - strand, within HP15_1234 at 1285.407 kb on - strand, within HP15_1234 at 1285.468 kb on + strand, within HP15_1234 at 1285.542 kb on - strand at 1285.543 kb on + strand at 1285.632 kb on + strand, within HP15_1235 at 1285.694 kb on - strand, within HP15_1235 at 1285.774 kb on - strand, within HP15_1235 at 1285.845 kb on + strand, within HP15_1235 at 1285.845 kb on + strand, within HP15_1235 at 1285.850 kb on + strand, within HP15_1235 at 1285.853 kb on - strand, within HP15_1235 at 1285.853 kb on - strand, within HP15_1235 at 1285.858 kb on - strand, within HP15_1235 at 1285.940 kb on + strand at 1285.994 kb on + strand at 1286.120 kb on - strand, within HP15_1236 at 1286.269 kb on - strand, within HP15_1236 at 1286.269 kb on - strand, within HP15_1236 at 1286.308 kb on + strand, within HP15_1236 at 1286.372 kb on - strand, within HP15_1236 at 1286.384 kb on + strand, within HP15_1236 at 1286.394 kb on + strand, within HP15_1236 at 1286.436 kb on + strand, within HP15_1236 at 1286.449 kb on - strand, within HP15_1236 at 1286.449 kb on - strand, within HP15_1236 at 1286.449 kb on - strand, within HP15_1236 at 1286.873 kb on + strand, within HP15_1236 at 1286.883 kb on + strand, within HP15_1236
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,284,616 + HP15_1233 0.60 -0.2 1,284,616 - HP15_1233 0.60 +0.7 1,284,634 + HP15_1233 0.62 -0.2 1,284,637 - HP15_1233 0.62 +0.1 1,284,642 - HP15_1233 0.62 +1.1 1,284,655 - HP15_1233 0.63 +0.3 1,284,736 + HP15_1233 0.70 +0.4 1,284,744 - HP15_1233 0.71 -0.7 1,284,830 + HP15_1233 0.78 +0.3 1,284,843 - HP15_1233 0.79 +1.1 1,284,926 + HP15_1233 0.86 +1.0 1,284,939 + HP15_1233 0.87 -0.2 1,284,954 + HP15_1233 0.88 -0.9 1,284,960 + HP15_1233 0.89 +1.3 1,284,981 + +0.6 1,284,981 - -0.9 1,285,010 + +0.0 1,285,059 - +0.3 1,285,059 - -0.2 1,285,068 + +0.4 1,285,085 - +1.4 1,285,179 - -0.1 1,285,179 - -0.8 1,285,188 + -0.1 1,285,274 - -0.2 1,285,346 - HP15_1234 0.23 -0.4 1,285,357 - HP15_1234 0.27 -0.4 1,285,407 - HP15_1234 0.46 -1.3 1,285,407 - HP15_1234 0.46 -1.0 1,285,468 + HP15_1234 0.69 +0.3 1,285,542 - +1.4 1,285,543 + -0.1 1,285,632 + HP15_1235 0.21 -0.1 1,285,694 - HP15_1235 0.39 +0.1 1,285,774 - HP15_1235 0.63 +0.4 1,285,845 + HP15_1235 0.83 -0.6 1,285,845 + HP15_1235 0.83 +0.7 1,285,850 + HP15_1235 0.85 +1.0 1,285,853 - HP15_1235 0.86 +1.7 1,285,853 - HP15_1235 0.86 +1.2 1,285,858 - HP15_1235 0.87 +1.7 1,285,940 + +1.2 1,285,994 + +0.6 1,286,120 - HP15_1236 0.10 -0.5 1,286,269 - HP15_1236 0.17 +2.1 1,286,269 - HP15_1236 0.17 +0.4 1,286,308 + HP15_1236 0.19 +1.0 1,286,372 - HP15_1236 0.22 +0.4 1,286,384 + HP15_1236 0.23 +1.3 1,286,394 + HP15_1236 0.23 +1.5 1,286,436 + HP15_1236 0.25 +1.0 1,286,449 - HP15_1236 0.26 +2.0 1,286,449 - HP15_1236 0.26 +2.0 1,286,449 - HP15_1236 0.26 +1.3 1,286,873 + HP15_1236 0.46 +1.9 1,286,883 + HP15_1236 0.46 -0.2
Or see this region's nucleotide sequence