Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1133 and HP15_1134 are separated by 245 nucleotides HP15_1134 and HP15_1135 are separated by 286 nucleotides HP15_1135 and HP15_1136 are separated by 5 nucleotides HP15_1136 and HP15_1137 are separated by 1 nucleotides
HP15_1133: HP15_1133 - protein containing DUF785, at 1,162,424 to 1,163,122
_1133
HP15_1134: HP15_1134 - conserved hypothetical protein, at 1,163,368 to 1,163,757
_1134
HP15_1135: HP15_1135 - DNA recombination protein RmuC, at 1,164,044 to 1,165,519
_1135
HP15_1136: HP15_1136 - protein containing tetratricopeptide repeat protein, at 1,165,525 to 1,166,379
_1136
HP15_1137: HP15_1137 - helix-turn-helix domain containing protein, AraC type, at 1,166,381 to 1,167,412
_1137
Position (kb)
1164
1165
1166 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1163.085 kb on + strand at 1163.104 kb on + strand at 1163.152 kb on + strand at 1163.192 kb on - strand at 1163.236 kb on - strand at 1163.236 kb on - strand at 1163.236 kb on - strand at 1163.304 kb on + strand at 1163.307 kb on - strand at 1163.356 kb on - strand at 1163.364 kb on - strand at 1163.366 kb on - strand at 1163.539 kb on + strand, within HP15_1134 at 1163.547 kb on - strand, within HP15_1134 at 1163.573 kb on + strand, within HP15_1134 at 1163.573 kb on + strand, within HP15_1134 at 1163.583 kb on + strand, within HP15_1134 at 1163.645 kb on + strand, within HP15_1134 at 1163.672 kb on - strand, within HP15_1134 at 1163.679 kb on + strand, within HP15_1134 at 1163.692 kb on + strand, within HP15_1134 at 1163.792 kb on + strand at 1163.908 kb on + strand at 1163.945 kb on - strand at 1164.169 kb on - strand at 1164.238 kb on - strand, within HP15_1135 at 1164.240 kb on + strand, within HP15_1135 at 1164.240 kb on + strand, within HP15_1135 at 1164.248 kb on - strand, within HP15_1135 at 1164.490 kb on + strand, within HP15_1135 at 1164.599 kb on - strand, within HP15_1135 at 1164.635 kb on - strand, within HP15_1135 at 1164.672 kb on + strand, within HP15_1135 at 1164.713 kb on - strand, within HP15_1135 at 1164.738 kb on + strand, within HP15_1135 at 1164.930 kb on - strand, within HP15_1135 at 1165.005 kb on + strand, within HP15_1135 at 1165.097 kb on + strand, within HP15_1135 at 1165.165 kb on + strand, within HP15_1135 at 1165.279 kb on + strand, within HP15_1135 at 1165.285 kb on - strand, within HP15_1135 at 1165.327 kb on - strand, within HP15_1135 at 1165.327 kb on - strand, within HP15_1135 at 1165.544 kb on - strand at 1165.634 kb on + strand, within HP15_1136 at 1165.654 kb on - strand, within HP15_1136 at 1165.671 kb on + strand, within HP15_1136 at 1165.679 kb on - strand, within HP15_1136 at 1165.861 kb on - strand, within HP15_1136 at 1165.921 kb on - strand, within HP15_1136 at 1166.211 kb on + strand, within HP15_1136 at 1166.250 kb on - strand, within HP15_1136 at 1166.264 kb on + strand, within HP15_1136 at 1166.270 kb on + strand, within HP15_1136 at 1166.272 kb on - strand, within HP15_1136
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,163,085 + +0.1 1,163,104 + -0.9 1,163,152 + -0.2 1,163,192 - -0.1 1,163,236 - -0.1 1,163,236 - -0.5 1,163,236 - +0.1 1,163,304 + -0.7 1,163,307 - -0.5 1,163,356 - -0.5 1,163,364 - +1.2 1,163,366 - +1.2 1,163,539 + HP15_1134 0.44 +0.2 1,163,547 - HP15_1134 0.46 +0.9 1,163,573 + HP15_1134 0.53 -0.1 1,163,573 + HP15_1134 0.53 -0.5 1,163,583 + HP15_1134 0.55 -1.1 1,163,645 + HP15_1134 0.71 +0.0 1,163,672 - HP15_1134 0.78 +0.2 1,163,679 + HP15_1134 0.80 +1.8 1,163,692 + HP15_1134 0.83 +0.1 1,163,792 + -0.5 1,163,908 + -0.7 1,163,945 - -0.9 1,164,169 - -0.7 1,164,238 - HP15_1135 0.13 +1.9 1,164,240 + HP15_1135 0.13 -1.2 1,164,240 + HP15_1135 0.13 +0.9 1,164,248 - HP15_1135 0.14 -0.0 1,164,490 + HP15_1135 0.30 +1.1 1,164,599 - HP15_1135 0.38 +0.1 1,164,635 - HP15_1135 0.40 -1.3 1,164,672 + HP15_1135 0.43 -0.0 1,164,713 - HP15_1135 0.45 -0.9 1,164,738 + HP15_1135 0.47 +1.1 1,164,930 - HP15_1135 0.60 -0.3 1,165,005 + HP15_1135 0.65 +0.2 1,165,097 + HP15_1135 0.71 +0.7 1,165,165 + HP15_1135 0.76 +0.5 1,165,279 + HP15_1135 0.84 -1.7 1,165,285 - HP15_1135 0.84 +0.5 1,165,327 - HP15_1135 0.87 +0.6 1,165,327 - HP15_1135 0.87 +1.5 1,165,544 - +0.4 1,165,634 + HP15_1136 0.13 +4.0 1,165,654 - HP15_1136 0.15 +1.1 1,165,671 + HP15_1136 0.17 -0.7 1,165,679 - HP15_1136 0.18 -1.4 1,165,861 - HP15_1136 0.39 -0.6 1,165,921 - HP15_1136 0.46 +1.1 1,166,211 + HP15_1136 0.80 +0.5 1,166,250 - HP15_1136 0.85 +1.3 1,166,264 + HP15_1136 0.86 +0.1 1,166,270 + HP15_1136 0.87 -0.3 1,166,272 - HP15_1136 0.87 +1.0
Or see this region's nucleotide sequence