Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3469 and Dsui_3470 are separated by 195 nucleotides Dsui_3470 and Dsui_3471 overlap by 4 nucleotides Dsui_3471 and Dsui_3472 are separated by 10 nucleotides Dsui_3472 and Dsui_3473 are separated by 10 nucleotides Dsui_3473 and Dsui_3474 overlap by 4 nucleotides
Dsui_3469: Dsui_3469 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,732,786 to 3,733,415
_3469
Dsui_3470: Dsui_3470 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,733,611 to 3,734,009
_3470
Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151
_3471
Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530
_3472
Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855
_3473
Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071
_3474
Position (kb)
3734
3735
3736 Strain fitness (log2 ratio)
-1
0
1 at 3733.063 kb on - strand, within Dsui_3469 at 3733.324 kb on - strand, within Dsui_3469 at 3733.386 kb on + strand at 3733.394 kb on - strand at 3733.542 kb on - strand at 3734.045 kb on - strand at 3734.045 kb on - strand at 3734.072 kb on - strand at 3734.137 kb on + strand at 3734.209 kb on + strand at 3734.279 kb on - strand at 3734.430 kb on + strand at 3734.430 kb on + strand, within Dsui_3471 at 3734.703 kb on - strand at 3734.724 kb on + strand, within Dsui_3471 at 3734.793 kb on + strand at 3734.807 kb on - strand at 3734.840 kb on + strand, within Dsui_3471 at 3735.265 kb on + strand at 3735.274 kb on + strand at 3735.341 kb on - strand at 3735.497 kb on - strand at 3735.532 kb on - strand at 3735.532 kb on - strand at 3735.546 kb on + strand at 3735.578 kb on + strand, within Dsui_3473 at 3735.676 kb on - strand, within Dsui_3473 at 3735.774 kb on - strand at 3735.836 kb on + strand at 3735.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,733,063 - Dsui_3469 0.44 -0.9 3,733,324 - Dsui_3469 0.85 -1.3 3,733,386 + +0.7 3,733,394 - +0.7 3,733,542 - +0.7 3,734,045 - +0.7 3,734,045 - +0.7 3,734,072 - +0.7 3,734,137 + +0.7 3,734,209 + -0.3 3,734,279 - +0.7 3,734,430 + +0.7 3,734,430 + Dsui_3471 0.37 -1.3 3,734,703 - -0.9 3,734,724 + Dsui_3471 0.63 -0.9 3,734,793 + +0.7 3,734,807 - +0.7 3,734,840 + Dsui_3471 0.73 -1.3 3,735,265 + -0.3 3,735,274 + +0.7 3,735,341 - +0.7 3,735,497 - +0.7 3,735,532 - +0.7 3,735,532 - -0.3 3,735,546 + -0.9 3,735,578 + Dsui_3473 0.12 +0.7 3,735,676 - Dsui_3473 0.43 -0.9 3,735,774 - +0.7 3,735,836 + +0.7 3,735,900 - -0.9
Or see this region's nucleotide sequence