Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3255 and Dsui_3256 are separated by 35 nucleotides Dsui_3256 and Dsui_3257 overlap by 11 nucleotides Dsui_3257 and Dsui_3258 are separated by 2 nucleotides Dsui_3258 and Dsui_3259 are separated by 138 nucleotides
Dsui_3255: Dsui_3255 - integral membrane protein MviN, at 3,494,366 to 3,495,910
_3255
Dsui_3256: Dsui_3256 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 3,495,946 to 3,496,575
_3256
Dsui_3257: Dsui_3257 - bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities, at 3,496,565 to 3,497,710
_3257
Dsui_3258: Dsui_3258 - mannose-6-phosphate isomerase, at 3,497,713 to 3,498,105
_3258
Dsui_3259: Dsui_3259 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 3,498,244 to 3,499,014
_3259
Position (kb)
3496
3497
3498 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3495.972 kb on - strand at 3496.018 kb on + strand, within Dsui_3256 at 3496.040 kb on + strand, within Dsui_3256 at 3496.060 kb on - strand at 3496.062 kb on + strand, within Dsui_3256 at 3496.102 kb on - strand, within Dsui_3256 at 3496.112 kb on - strand, within Dsui_3256 at 3496.197 kb on - strand, within Dsui_3256 at 3496.230 kb on - strand, within Dsui_3256 at 3496.270 kb on + strand, within Dsui_3256 at 3496.368 kb on + strand, within Dsui_3256 at 3496.577 kb on - strand at 3496.600 kb on - strand at 3496.603 kb on + strand at 3496.617 kb on - strand at 3496.714 kb on + strand, within Dsui_3257 at 3496.722 kb on - strand, within Dsui_3257 at 3496.724 kb on + strand, within Dsui_3257 at 3496.783 kb on - strand, within Dsui_3257 at 3496.812 kb on - strand, within Dsui_3257 at 3496.843 kb on - strand, within Dsui_3257 at 3496.911 kb on - strand at 3496.980 kb on + strand at 3496.985 kb on + strand at 3496.988 kb on - strand, within Dsui_3257 at 3497.034 kb on - strand, within Dsui_3257 at 3497.063 kb on + strand, within Dsui_3257 at 3497.126 kb on + strand, within Dsui_3257 at 3497.138 kb on - strand, within Dsui_3257 at 3497.160 kb on - strand, within Dsui_3257 at 3497.290 kb on + strand at 3497.290 kb on + strand at 3497.290 kb on + strand, within Dsui_3257 at 3497.314 kb on + strand at 3497.356 kb on - strand, within Dsui_3257 at 3497.363 kb on - strand, within Dsui_3257 at 3497.397 kb on - strand, within Dsui_3257 at 3497.397 kb on - strand, within Dsui_3257 at 3497.412 kb on - strand, within Dsui_3257 at 3497.427 kb on - strand, within Dsui_3257 at 3497.574 kb on + strand, within Dsui_3257 at 3497.665 kb on - strand at 3497.712 kb on + strand at 3497.785 kb on - strand, within Dsui_3258 at 3497.802 kb on + strand, within Dsui_3258 at 3497.810 kb on - strand, within Dsui_3258 at 3497.823 kb on - strand, within Dsui_3258 at 3497.923 kb on - strand, within Dsui_3258 at 3497.955 kb on - strand, within Dsui_3258 at 3498.106 kb on - strand at 3498.145 kb on + strand at 3498.247 kb on + strand at 3498.332 kb on + strand, within Dsui_3259 at 3498.517 kb on + strand, within Dsui_3259 at 3498.522 kb on - strand at 3498.552 kb on - strand at 3498.696 kb on - strand, within Dsui_3259
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,495,972 - +0.7 3,496,018 + Dsui_3256 0.11 -0.1 3,496,040 + Dsui_3256 0.15 -0.3 3,496,060 - -0.3 3,496,062 + Dsui_3256 0.18 -0.4 3,496,102 - Dsui_3256 0.25 -1.9 3,496,112 - Dsui_3256 0.26 +0.7 3,496,197 - Dsui_3256 0.40 +0.7 3,496,230 - Dsui_3256 0.45 -1.3 3,496,270 + Dsui_3256 0.51 -0.6 3,496,368 + Dsui_3256 0.67 -0.9 3,496,577 - -1.6 3,496,600 - -0.3 3,496,603 + -0.3 3,496,617 - -0.3 3,496,714 + Dsui_3257 0.13 -0.9 3,496,722 - Dsui_3257 0.14 +0.7 3,496,724 + Dsui_3257 0.14 -1.3 3,496,783 - Dsui_3257 0.19 -2.9 3,496,812 - Dsui_3257 0.22 -0.5 3,496,843 - Dsui_3257 0.24 -2.1 3,496,911 - +0.7 3,496,980 + -0.9 3,496,985 + -0.9 3,496,988 - Dsui_3257 0.37 -0.9 3,497,034 - Dsui_3257 0.41 -1.9 3,497,063 + Dsui_3257 0.43 +2.3 3,497,126 + Dsui_3257 0.49 -0.3 3,497,138 - Dsui_3257 0.50 -2.1 3,497,160 - Dsui_3257 0.52 -1.3 3,497,290 + +0.7 3,497,290 + +0.7 3,497,290 + Dsui_3257 0.63 +0.7 3,497,314 + -0.3 3,497,356 - Dsui_3257 0.69 +0.7 3,497,363 - Dsui_3257 0.70 -2.1 3,497,397 - Dsui_3257 0.73 +0.7 3,497,397 - Dsui_3257 0.73 -0.0 3,497,412 - Dsui_3257 0.74 +0.7 3,497,427 - Dsui_3257 0.75 -2.3 3,497,574 + Dsui_3257 0.88 -1.3 3,497,665 - -0.3 3,497,712 + -1.6 3,497,785 - Dsui_3258 0.18 -1.3 3,497,802 + Dsui_3258 0.23 +0.7 3,497,810 - Dsui_3258 0.25 -0.6 3,497,823 - Dsui_3258 0.28 -2.3 3,497,923 - Dsui_3258 0.53 +0.7 3,497,955 - Dsui_3258 0.62 +0.0 3,498,106 - -1.0 3,498,145 + +0.7 3,498,247 + -0.3 3,498,332 + Dsui_3259 0.11 -0.3 3,498,517 + Dsui_3259 0.35 -0.3 3,498,522 - +0.7 3,498,552 - +0.7 3,498,696 - Dsui_3259 0.59 -0.9
Or see this region's nucleotide sequence