Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3248 and Dsui_3249 are separated by 18 nucleotides Dsui_3249 and Dsui_3250 are separated by 24 nucleotides Dsui_3250 and Dsui_3251 are separated by 214 nucleotides
Dsui_3248: Dsui_3248 - argininosuccinate synthase, at 3,488,583 to 3,489,812
_3248
Dsui_3249: Dsui_3249 - ornithine carbamoyltransferase, at 3,489,831 to 3,490,754
_3249
Dsui_3250: Dsui_3250 - acetylornithine/succinylornithine aminotransferase, at 3,490,779 to 3,491,951
_3250
Dsui_3251: Dsui_3251 - ATPase involved in chromosome partitioning, at 3,492,166 to 3,492,930
_3251
Position (kb)
3490
3491
3492 Strain fitness (log2 ratio)
-2
-1
0
1 at 3490.759 kb on - strand at 3490.759 kb on - strand at 3490.766 kb on - strand at 3490.774 kb on - strand at 3490.784 kb on - strand at 3490.794 kb on - strand at 3490.818 kb on - strand at 3490.834 kb on - strand at 3490.834 kb on - strand at 3490.955 kb on - strand, within Dsui_3250 at 3490.996 kb on - strand, within Dsui_3250 at 3491.046 kb on - strand, within Dsui_3250 at 3491.105 kb on - strand, within Dsui_3250 at 3491.229 kb on - strand, within Dsui_3250 at 3491.229 kb on - strand, within Dsui_3250 at 3491.306 kb on - strand, within Dsui_3250 at 3491.400 kb on - strand, within Dsui_3250 at 3491.406 kb on - strand, within Dsui_3250 at 3491.761 kb on - strand, within Dsui_3250 at 3491.761 kb on - strand, within Dsui_3250 at 3491.812 kb on - strand, within Dsui_3250 at 3491.865 kb on - strand at 3491.955 kb on - strand at 3491.966 kb on - strand at 3492.039 kb on + strand at 3492.042 kb on - strand at 3492.042 kb on - strand at 3492.044 kb on + strand at 3492.062 kb on - strand at 3492.087 kb on - strand at 3492.113 kb on + strand at 3492.113 kb on + strand at 3492.118 kb on + strand at 3492.124 kb on + strand at 3492.132 kb on - strand at 3492.149 kb on - strand at 3492.156 kb on + strand at 3492.221 kb on + strand at 3492.229 kb on - strand at 3492.276 kb on + strand, within Dsui_3251 at 3492.294 kb on + strand, within Dsui_3251 at 3492.347 kb on + strand, within Dsui_3251 at 3492.370 kb on - strand, within Dsui_3251 at 3492.486 kb on + strand, within Dsui_3251 at 3492.706 kb on + strand, within Dsui_3251 at 3492.759 kb on + strand at 3492.833 kb on + strand, within Dsui_3251 at 3492.833 kb on + strand, within Dsui_3251 at 3492.841 kb on - strand, within Dsui_3251 at 3492.841 kb on - strand, within Dsui_3251 at 3492.847 kb on - strand, within Dsui_3251 at 3492.883 kb on - strand at 3492.887 kb on + strand at 3492.890 kb on - strand at 3492.890 kb on - strand at 3492.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,490,759 - -2.3 3,490,759 - +0.2 3,490,766 - -0.1 3,490,774 - +0.7 3,490,784 - +0.1 3,490,794 - +0.0 3,490,818 - +0.1 3,490,834 - +0.3 3,490,834 - +0.1 3,490,955 - Dsui_3250 0.15 +0.3 3,490,996 - Dsui_3250 0.18 +0.2 3,491,046 - Dsui_3250 0.23 +0.2 3,491,105 - Dsui_3250 0.28 +0.3 3,491,229 - Dsui_3250 0.38 +0.0 3,491,229 - Dsui_3250 0.38 +0.5 3,491,306 - Dsui_3250 0.45 +0.1 3,491,400 - Dsui_3250 0.53 +0.5 3,491,406 - Dsui_3250 0.53 +0.1 3,491,761 - Dsui_3250 0.84 +0.0 3,491,761 - Dsui_3250 0.84 +0.1 3,491,812 - Dsui_3250 0.88 -0.1 3,491,865 - +0.0 3,491,955 - +0.5 3,491,966 - +0.2 3,492,039 + -1.3 3,492,042 - +0.3 3,492,042 - -0.1 3,492,044 + +0.7 3,492,062 - -0.6 3,492,087 - +0.1 3,492,113 + -0.3 3,492,113 + -0.3 3,492,118 + -0.9 3,492,124 + -0.3 3,492,132 - +0.7 3,492,149 - -1.3 3,492,156 + +0.7 3,492,221 + +0.7 3,492,229 - +0.7 3,492,276 + Dsui_3251 0.14 +0.7 3,492,294 + Dsui_3251 0.17 -1.6 3,492,347 + Dsui_3251 0.24 +0.7 3,492,370 - Dsui_3251 0.27 -0.3 3,492,486 + Dsui_3251 0.42 +0.7 3,492,706 + Dsui_3251 0.71 +0.7 3,492,759 + +0.7 3,492,833 + Dsui_3251 0.87 -0.3 3,492,833 + Dsui_3251 0.87 +0.7 3,492,841 - Dsui_3251 0.88 -0.9 3,492,841 - Dsui_3251 0.88 -0.3 3,492,847 - Dsui_3251 0.89 -0.3 3,492,883 - -0.5 3,492,887 + -0.9 3,492,890 - -1.1 3,492,890 - -1.3 3,492,895 - +0.7
Or see this region's nucleotide sequence