Strain Fitness in Dechlorosoma suillum PS around Dsui_3242

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3240 and Dsui_3241 are separated by 168 nucleotidesDsui_3241 and Dsui_3242 overlap by 17 nucleotidesDsui_3242 and Dsui_3243 are separated by 21 nucleotidesDsui_3243 and Dsui_3244 are separated by 22 nucleotides Dsui_3240: Dsui_3240 - cobalamin biosynthesis protein cobD/CbiB, at 3,484,097 to 3,485,017 _3240 Dsui_3241: Dsui_3241 - NTP pyrophosphohydrolase, at 3,485,186 to 3,485,812 _3241 Dsui_3242: Dsui_3242 - hypothetical protein, at 3,485,796 to 3,486,056 _3242 Dsui_3243: Dsui_3243 - clan AA aspartic protease, TIGR02281 family, at 3,486,078 to 3,486,728 _3243 Dsui_3244: Dsui_3244 - GMP synthase family protein, at 3,486,751 to 3,487,461 _3244 Position (kb) 3485 3486 3487Strain fitness (log2 ratio) -3 -2 -1 0 1at 3484.809 kb on + strand, within Dsui_3240at 3484.942 kb on - strandat 3484.976 kb on - strandat 3484.976 kb on - strandat 3485.118 kb on + strandat 3485.168 kb on - strandat 3485.206 kb on + strandat 3485.276 kb on - strand, within Dsui_3241at 3485.276 kb on - strand, within Dsui_3241at 3485.276 kb on - strand, within Dsui_3241at 3485.276 kb on - strand, within Dsui_3241at 3485.351 kb on + strand, within Dsui_3241at 3485.359 kb on - strand, within Dsui_3241at 3485.397 kb on - strand, within Dsui_3241at 3485.401 kb on + strand, within Dsui_3241at 3485.428 kb on + strand, within Dsui_3241at 3485.502 kb on - strand, within Dsui_3241at 3485.578 kb on + strand, within Dsui_3241at 3485.611 kb on + strandat 3485.619 kb on - strand, within Dsui_3241at 3485.619 kb on - strand, within Dsui_3241at 3485.619 kb on - strand, within Dsui_3241at 3485.643 kb on + strand, within Dsui_3241at 3485.776 kb on + strandat 3485.840 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3486.006 kb on - strand, within Dsui_3242at 3486.006 kb on - strand, within Dsui_3242at 3486.008 kb on + strand, within Dsui_3242at 3486.027 kb on - strand, within Dsui_3242at 3486.073 kb on - strandat 3486.073 kb on - strandat 3486.097 kb on + strandat 3486.105 kb on - strandat 3486.163 kb on - strand, within Dsui_3243at 3486.174 kb on + strand, within Dsui_3243at 3486.182 kb on - strand, within Dsui_3243at 3486.236 kb on - strand, within Dsui_3243at 3486.246 kb on - strand, within Dsui_3243at 3486.300 kb on - strand, within Dsui_3243at 3486.349 kb on - strand, within Dsui_3243at 3486.431 kb on + strand, within Dsui_3243at 3486.431 kb on + strand, within Dsui_3243at 3486.437 kb on + strand, within Dsui_3243at 3486.439 kb on - strand, within Dsui_3243at 3486.445 kb on - strand, within Dsui_3243at 3486.445 kb on - strand, within Dsui_3243at 3486.474 kb on + strand, within Dsui_3243at 3486.493 kb on - strand, within Dsui_3243at 3486.539 kb on - strand, within Dsui_3243at 3486.555 kb on + strand, within Dsui_3243at 3486.578 kb on + strand, within Dsui_3243at 3486.614 kb on + strand, within Dsui_3243at 3486.696 kb on - strandat 3486.707 kb on + strandat 3486.710 kb on - strandat 3486.833 kb on + strand, within Dsui_3244at 3486.841 kb on - strand, within Dsui_3244at 3486.841 kb on - strand, within Dsui_3244at 3486.841 kb on - strand, within Dsui_3244at 3486.841 kb on - strand, within Dsui_3244at 3486.841 kb on - strand, within Dsui_3244at 3486.910 kb on - strand, within Dsui_3244at 3486.939 kb on + strand, within Dsui_3244at 3486.949 kb on + strand, within Dsui_3244at 3486.956 kb on + strand, within Dsui_3244at 3486.956 kb on + strand, within Dsui_3244at 3486.956 kb on + strand, within Dsui_3244at 3486.956 kb on + strand, within Dsui_3244at 3486.964 kb on - strand, within Dsui_3244at 3487.036 kb on + strand, within Dsui_3244

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,484,809 + Dsui_3240 0.77 +0.7
3,484,942 - -1.8
3,484,976 - -1.2
3,484,976 - -1.3
3,485,118 + -0.3
3,485,168 - -0.1
3,485,206 + +0.7
3,485,276 - Dsui_3241 0.14 -0.2
3,485,276 - Dsui_3241 0.14 -0.2
3,485,276 - Dsui_3241 0.14 -0.1
3,485,276 - Dsui_3241 0.14 -0.2
3,485,351 + Dsui_3241 0.26 +0.7
3,485,359 - Dsui_3241 0.28 -0.2
3,485,397 - Dsui_3241 0.34 -0.3
3,485,401 + Dsui_3241 0.34 +0.7
3,485,428 + Dsui_3241 0.39 -2.5
3,485,502 - Dsui_3241 0.50 -0.2
3,485,578 + Dsui_3241 0.63 +0.7
3,485,611 + +0.7
3,485,619 - Dsui_3241 0.69 +0.1
3,485,619 - Dsui_3241 0.69 -0.1
3,485,619 - Dsui_3241 0.69 +0.4
3,485,643 + Dsui_3241 0.73 -2.9
3,485,776 + -0.3
3,485,840 + Dsui_3242 0.17 -0.3
3,485,998 + Dsui_3242 0.77 -0.3
3,485,998 + Dsui_3242 0.77 -0.3
3,485,998 + Dsui_3242 0.77 -1.6
3,485,998 + Dsui_3242 0.77 +0.7
3,486,006 - Dsui_3242 0.80 -0.5
3,486,006 - Dsui_3242 0.80 -0.1
3,486,008 + Dsui_3242 0.81 -0.9
3,486,027 - Dsui_3242 0.89 -0.2
3,486,073 - -0.2
3,486,073 - -0.2
3,486,097 + -1.9
3,486,105 - -0.2
3,486,163 - Dsui_3243 0.13 -0.2
3,486,174 + Dsui_3243 0.15 -1.6
3,486,182 - Dsui_3243 0.16 -0.1
3,486,236 - Dsui_3243 0.24 +0.2
3,486,246 - Dsui_3243 0.26 -0.3
3,486,300 - Dsui_3243 0.34 -0.0
3,486,349 - Dsui_3243 0.42 -0.2
3,486,431 + Dsui_3243 0.54 -0.3
3,486,431 + Dsui_3243 0.54 -0.9
3,486,437 + Dsui_3243 0.55 -0.9
3,486,439 - Dsui_3243 0.55 +0.0
3,486,445 - Dsui_3243 0.56 +0.9
3,486,445 - Dsui_3243 0.56 -0.4
3,486,474 + Dsui_3243 0.61 +0.7
3,486,493 - Dsui_3243 0.64 +0.0
3,486,539 - Dsui_3243 0.71 -0.2
3,486,555 + Dsui_3243 0.73 -1.6
3,486,578 + Dsui_3243 0.77 +0.7
3,486,614 + Dsui_3243 0.82 -0.3
3,486,696 - -0.7
3,486,707 + -0.6
3,486,710 - -0.2
3,486,833 + Dsui_3244 0.12 -1.3
3,486,841 - Dsui_3244 0.13 -2.9
3,486,841 - Dsui_3244 0.13 -0.3
3,486,841 - Dsui_3244 0.13 +0.7
3,486,841 - Dsui_3244 0.13 -0.9
3,486,841 - Dsui_3244 0.13 -0.3
3,486,910 - Dsui_3244 0.22 -0.9
3,486,939 + Dsui_3244 0.26 -2.1
3,486,949 + Dsui_3244 0.28 -1.8
3,486,956 + Dsui_3244 0.29 -0.9
3,486,956 + Dsui_3244 0.29 -0.3
3,486,956 + Dsui_3244 0.29 -1.3
3,486,956 + Dsui_3244 0.29 +0.7
3,486,964 - Dsui_3244 0.30 +0.7
3,487,036 + Dsui_3244 0.40 -1.2

Or see this region's nucleotide sequence