Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3240 and Dsui_3241 are separated by 168 nucleotides Dsui_3241 and Dsui_3242 overlap by 17 nucleotides Dsui_3242 and Dsui_3243 are separated by 21 nucleotides Dsui_3243 and Dsui_3244 are separated by 22 nucleotides
Dsui_3240: Dsui_3240 - cobalamin biosynthesis protein cobD/CbiB, at 3,484,097 to 3,485,017
_3240
Dsui_3241: Dsui_3241 - NTP pyrophosphohydrolase, at 3,485,186 to 3,485,812
_3241
Dsui_3242: Dsui_3242 - hypothetical protein, at 3,485,796 to 3,486,056
_3242
Dsui_3243: Dsui_3243 - clan AA aspartic protease, TIGR02281 family, at 3,486,078 to 3,486,728
_3243
Dsui_3244: Dsui_3244 - GMP synthase family protein, at 3,486,751 to 3,487,461
_3244
Position (kb)
3485
3486
3487 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3484.809 kb on + strand, within Dsui_3240 at 3484.942 kb on - strand at 3484.976 kb on - strand at 3484.976 kb on - strand at 3485.118 kb on + strand at 3485.168 kb on - strand at 3485.206 kb on + strand at 3485.276 kb on - strand, within Dsui_3241 at 3485.276 kb on - strand, within Dsui_3241 at 3485.276 kb on - strand, within Dsui_3241 at 3485.276 kb on - strand, within Dsui_3241 at 3485.351 kb on + strand, within Dsui_3241 at 3485.359 kb on - strand, within Dsui_3241 at 3485.397 kb on - strand, within Dsui_3241 at 3485.401 kb on + strand, within Dsui_3241 at 3485.428 kb on + strand, within Dsui_3241 at 3485.502 kb on - strand, within Dsui_3241 at 3485.578 kb on + strand, within Dsui_3241 at 3485.611 kb on + strand at 3485.619 kb on - strand, within Dsui_3241 at 3485.619 kb on - strand, within Dsui_3241 at 3485.619 kb on - strand, within Dsui_3241 at 3485.643 kb on + strand, within Dsui_3241 at 3485.776 kb on + strand at 3485.840 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3486.006 kb on - strand, within Dsui_3242 at 3486.006 kb on - strand, within Dsui_3242 at 3486.008 kb on + strand, within Dsui_3242 at 3486.027 kb on - strand, within Dsui_3242 at 3486.073 kb on - strand at 3486.073 kb on - strand at 3486.097 kb on + strand at 3486.105 kb on - strand at 3486.163 kb on - strand, within Dsui_3243 at 3486.174 kb on + strand, within Dsui_3243 at 3486.182 kb on - strand, within Dsui_3243 at 3486.236 kb on - strand, within Dsui_3243 at 3486.246 kb on - strand, within Dsui_3243 at 3486.300 kb on - strand, within Dsui_3243 at 3486.349 kb on - strand, within Dsui_3243 at 3486.431 kb on + strand, within Dsui_3243 at 3486.431 kb on + strand, within Dsui_3243 at 3486.437 kb on + strand, within Dsui_3243 at 3486.439 kb on - strand, within Dsui_3243 at 3486.445 kb on - strand, within Dsui_3243 at 3486.445 kb on - strand, within Dsui_3243 at 3486.474 kb on + strand, within Dsui_3243 at 3486.493 kb on - strand, within Dsui_3243 at 3486.539 kb on - strand, within Dsui_3243 at 3486.555 kb on + strand, within Dsui_3243 at 3486.578 kb on + strand, within Dsui_3243 at 3486.614 kb on + strand, within Dsui_3243 at 3486.696 kb on - strand at 3486.707 kb on + strand at 3486.710 kb on - strand at 3486.833 kb on + strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.910 kb on - strand, within Dsui_3244 at 3486.939 kb on + strand, within Dsui_3244 at 3486.949 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.964 kb on - strand, within Dsui_3244 at 3487.036 kb on + strand, within Dsui_3244
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,484,809 + Dsui_3240 0.77 +0.7 3,484,942 - -1.8 3,484,976 - -1.2 3,484,976 - -1.3 3,485,118 + -0.3 3,485,168 - -0.1 3,485,206 + +0.7 3,485,276 - Dsui_3241 0.14 -0.2 3,485,276 - Dsui_3241 0.14 -0.2 3,485,276 - Dsui_3241 0.14 -0.1 3,485,276 - Dsui_3241 0.14 -0.2 3,485,351 + Dsui_3241 0.26 +0.7 3,485,359 - Dsui_3241 0.28 -0.2 3,485,397 - Dsui_3241 0.34 -0.3 3,485,401 + Dsui_3241 0.34 +0.7 3,485,428 + Dsui_3241 0.39 -2.5 3,485,502 - Dsui_3241 0.50 -0.2 3,485,578 + Dsui_3241 0.63 +0.7 3,485,611 + +0.7 3,485,619 - Dsui_3241 0.69 +0.1 3,485,619 - Dsui_3241 0.69 -0.1 3,485,619 - Dsui_3241 0.69 +0.4 3,485,643 + Dsui_3241 0.73 -2.9 3,485,776 + -0.3 3,485,840 + Dsui_3242 0.17 -0.3 3,485,998 + Dsui_3242 0.77 -0.3 3,485,998 + Dsui_3242 0.77 -0.3 3,485,998 + Dsui_3242 0.77 -1.6 3,485,998 + Dsui_3242 0.77 +0.7 3,486,006 - Dsui_3242 0.80 -0.5 3,486,006 - Dsui_3242 0.80 -0.1 3,486,008 + Dsui_3242 0.81 -0.9 3,486,027 - Dsui_3242 0.89 -0.2 3,486,073 - -0.2 3,486,073 - -0.2 3,486,097 + -1.9 3,486,105 - -0.2 3,486,163 - Dsui_3243 0.13 -0.2 3,486,174 + Dsui_3243 0.15 -1.6 3,486,182 - Dsui_3243 0.16 -0.1 3,486,236 - Dsui_3243 0.24 +0.2 3,486,246 - Dsui_3243 0.26 -0.3 3,486,300 - Dsui_3243 0.34 -0.0 3,486,349 - Dsui_3243 0.42 -0.2 3,486,431 + Dsui_3243 0.54 -0.3 3,486,431 + Dsui_3243 0.54 -0.9 3,486,437 + Dsui_3243 0.55 -0.9 3,486,439 - Dsui_3243 0.55 +0.0 3,486,445 - Dsui_3243 0.56 +0.9 3,486,445 - Dsui_3243 0.56 -0.4 3,486,474 + Dsui_3243 0.61 +0.7 3,486,493 - Dsui_3243 0.64 +0.0 3,486,539 - Dsui_3243 0.71 -0.2 3,486,555 + Dsui_3243 0.73 -1.6 3,486,578 + Dsui_3243 0.77 +0.7 3,486,614 + Dsui_3243 0.82 -0.3 3,486,696 - -0.7 3,486,707 + -0.6 3,486,710 - -0.2 3,486,833 + Dsui_3244 0.12 -1.3 3,486,841 - Dsui_3244 0.13 -2.9 3,486,841 - Dsui_3244 0.13 -0.3 3,486,841 - Dsui_3244 0.13 +0.7 3,486,841 - Dsui_3244 0.13 -0.9 3,486,841 - Dsui_3244 0.13 -0.3 3,486,910 - Dsui_3244 0.22 -0.9 3,486,939 + Dsui_3244 0.26 -2.1 3,486,949 + Dsui_3244 0.28 -1.8 3,486,956 + Dsui_3244 0.29 -0.9 3,486,956 + Dsui_3244 0.29 -0.3 3,486,956 + Dsui_3244 0.29 -1.3 3,486,956 + Dsui_3244 0.29 +0.7 3,486,964 - Dsui_3244 0.30 +0.7 3,487,036 + Dsui_3244 0.40 -1.2
Or see this region's nucleotide sequence