Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3138 and Dsui_3139 are separated by 21 nucleotides Dsui_3139 and Dsui_3140 overlap by 4 nucleotides Dsui_3140 and Dsui_3141 overlap by 1 nucleotides
Dsui_3138: Dsui_3138 - ribosome-associated GTPase EngA, at 3,359,834 to 3,361,219
_3138
Dsui_3139: Dsui_3139 - outer membrane assembly lipoprotein YfgL, at 3,361,241 to 3,362,389
_3139
Dsui_3140: Dsui_3140 - hypothetical protein, at 3,362,386 to 3,363,060
_3140
Dsui_3141: Dsui_3141 - histidyl-tRNA synthetase, at 3,363,060 to 3,364,358
_3141
Position (kb)
3361
3362
3363 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3361.257 kb on - strand at 3361.400 kb on - strand, within Dsui_3139 at 3361.523 kb on - strand, within Dsui_3139 at 3361.617 kb on - strand, within Dsui_3139 at 3361.657 kb on - strand, within Dsui_3139 at 3361.659 kb on - strand, within Dsui_3139 at 3361.715 kb on - strand, within Dsui_3139 at 3361.721 kb on - strand, within Dsui_3139 at 3362.148 kb on - strand, within Dsui_3139 at 3362.209 kb on - strand, within Dsui_3139 at 3362.291 kb on - strand at 3362.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,361,257 - -0.5 3,361,400 - Dsui_3139 0.14 -3.2 3,361,523 - Dsui_3139 0.25 -2.8 3,361,617 - Dsui_3139 0.33 -3.5 3,361,657 - Dsui_3139 0.36 -2.8 3,361,659 - Dsui_3139 0.36 -3.6 3,361,715 - Dsui_3139 0.41 -1.3 3,361,721 - Dsui_3139 0.42 -3.5 3,362,148 - Dsui_3139 0.79 -1.6 3,362,209 - Dsui_3139 0.84 -4.1 3,362,291 - -2.5 3,362,334 - -1.6
Or see this region's nucleotide sequence