Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2972 and Dsui_2973 are separated by 5 nucleotides Dsui_2973 and Dsui_2974 are separated by 4 nucleotides Dsui_2974 and Dsui_2975 are separated by 9 nucleotides
Dsui_2972: Dsui_2972 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,177,667 to 3,178,383
_2972
Dsui_2973: Dsui_2973 - putative arginyl-tRNA:protein arginylyltransferase, at 3,178,389 to 3,179,162
_2973
Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438
_2974
Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874
_2975
Position (kb)
3179
3180
3181 Strain fitness (log2 ratio)
-2
-1
0
1 at 3178.233 kb on + strand, within Dsui_2972 at 3178.241 kb on + strand, within Dsui_2972 at 3178.241 kb on + strand, within Dsui_2972 at 3178.441 kb on - strand at 3178.457 kb on - strand at 3178.486 kb on + strand, within Dsui_2973 at 3178.726 kb on + strand, within Dsui_2973 at 3178.936 kb on + strand, within Dsui_2973 at 3178.969 kb on + strand, within Dsui_2973 at 3179.151 kb on + strand at 3179.182 kb on + strand at 3179.237 kb on - strand at 3179.406 kb on + strand, within Dsui_2974 at 3179.429 kb on - strand, within Dsui_2974 at 3179.509 kb on - strand, within Dsui_2974 at 3179.509 kb on - strand, within Dsui_2974 at 3179.612 kb on - strand, within Dsui_2974 at 3179.625 kb on - strand, within Dsui_2974 at 3179.637 kb on + strand, within Dsui_2974 at 3179.734 kb on + strand at 3179.766 kb on + strand, within Dsui_2974 at 3179.856 kb on - strand, within Dsui_2974 at 3179.941 kb on + strand, within Dsui_2974 at 3179.941 kb on + strand, within Dsui_2974 at 3180.019 kb on - strand at 3180.019 kb on - strand at 3180.057 kb on + strand, within Dsui_2974 at 3180.057 kb on + strand at 3180.071 kb on - strand, within Dsui_2974 at 3180.221 kb on - strand, within Dsui_2974 at 3180.356 kb on + strand at 3180.364 kb on - strand at 3180.472 kb on + strand at 3180.627 kb on - strand at 3180.876 kb on - strand, within Dsui_2975 at 3180.881 kb on - strand at 3180.954 kb on + strand at 3181.058 kb on + strand at 3181.091 kb on + strand, within Dsui_2975 at 3181.249 kb on - strand, within Dsui_2975 at 3181.249 kb on - strand, within Dsui_2975 at 3181.269 kb on - strand, within Dsui_2975 at 3181.336 kb on - strand, within Dsui_2975 at 3181.362 kb on - strand, within Dsui_2975 at 3181.367 kb on - strand, within Dsui_2975 at 3181.428 kb on - strand, within Dsui_2975 at 3181.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,178,233 + Dsui_2972 0.79 -0.1 3,178,241 + Dsui_2972 0.80 -0.0 3,178,241 + Dsui_2972 0.80 -0.3 3,178,441 - +0.8 3,178,457 - +0.8 3,178,486 + Dsui_2973 0.13 -0.2 3,178,726 + Dsui_2973 0.44 +0.2 3,178,936 + Dsui_2973 0.71 +0.2 3,178,969 + Dsui_2973 0.75 -0.6 3,179,151 + -0.1 3,179,182 + -0.9 3,179,237 - +0.8 3,179,406 + Dsui_2974 0.19 -2.6 3,179,429 - Dsui_2974 0.21 -0.2 3,179,509 - Dsui_2974 0.27 -0.2 3,179,509 - Dsui_2974 0.27 -2.2 3,179,612 - Dsui_2974 0.35 -1.6 3,179,625 - Dsui_2974 0.36 -0.8 3,179,637 + Dsui_2974 0.37 +0.8 3,179,734 + +0.8 3,179,766 + Dsui_2974 0.47 +0.8 3,179,856 - Dsui_2974 0.54 -0.2 3,179,941 + Dsui_2974 0.61 +0.8 3,179,941 + Dsui_2974 0.61 -1.8 3,180,019 - +0.8 3,180,019 - +0.8 3,180,057 + Dsui_2974 0.70 -1.8 3,180,057 + +0.8 3,180,071 - Dsui_2974 0.71 +0.8 3,180,221 - Dsui_2974 0.83 -0.2 3,180,356 + +0.8 3,180,364 - -0.2 3,180,472 + -0.2 3,180,627 - -1.2 3,180,876 - Dsui_2975 0.18 -0.8 3,180,881 - -0.2 3,180,954 + +0.8 3,181,058 + +0.8 3,181,091 + Dsui_2975 0.26 +0.8 3,181,249 - Dsui_2975 0.33 -0.8 3,181,249 - Dsui_2975 0.33 -0.8 3,181,269 - Dsui_2975 0.34 -0.8 3,181,336 - Dsui_2975 0.37 -0.2 3,181,362 - Dsui_2975 0.38 -1.2 3,181,367 - Dsui_2975 0.38 -2.2 3,181,428 - Dsui_2975 0.40 -0.2 3,181,429 - +0.8
Or see this region's nucleotide sequence