Strain Fitness in Dechlorosoma suillum PS around Dsui_2974

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2972 and Dsui_2973 are separated by 5 nucleotidesDsui_2973 and Dsui_2974 are separated by 4 nucleotidesDsui_2974 and Dsui_2975 are separated by 9 nucleotides Dsui_2972: Dsui_2972 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,177,667 to 3,178,383 _2972 Dsui_2973: Dsui_2973 - putative arginyl-tRNA:protein arginylyltransferase, at 3,178,389 to 3,179,162 _2973 Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438 _2974 Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874 _2975 Position (kb) 3179 3180 3181Strain fitness (log2 ratio) -2 -1 0 1at 3178.233 kb on + strand, within Dsui_2972at 3178.241 kb on + strand, within Dsui_2972at 3178.241 kb on + strand, within Dsui_2972at 3178.441 kb on - strandat 3178.457 kb on - strandat 3178.486 kb on + strand, within Dsui_2973at 3178.726 kb on + strand, within Dsui_2973at 3178.936 kb on + strand, within Dsui_2973at 3178.969 kb on + strand, within Dsui_2973at 3179.151 kb on + strandat 3179.182 kb on + strandat 3179.237 kb on - strandat 3179.406 kb on + strand, within Dsui_2974at 3179.429 kb on - strand, within Dsui_2974at 3179.509 kb on - strand, within Dsui_2974at 3179.509 kb on - strand, within Dsui_2974at 3179.612 kb on - strand, within Dsui_2974at 3179.625 kb on - strand, within Dsui_2974at 3179.637 kb on + strand, within Dsui_2974at 3179.734 kb on + strandat 3179.766 kb on + strand, within Dsui_2974at 3179.856 kb on - strand, within Dsui_2974at 3179.941 kb on + strand, within Dsui_2974at 3179.941 kb on + strand, within Dsui_2974at 3180.019 kb on - strandat 3180.019 kb on - strandat 3180.057 kb on + strand, within Dsui_2974at 3180.057 kb on + strandat 3180.071 kb on - strand, within Dsui_2974at 3180.221 kb on - strand, within Dsui_2974at 3180.356 kb on + strandat 3180.364 kb on - strandat 3180.472 kb on + strandat 3180.627 kb on - strandat 3180.876 kb on - strand, within Dsui_2975at 3180.881 kb on - strandat 3180.954 kb on + strandat 3181.058 kb on + strandat 3181.091 kb on + strand, within Dsui_2975at 3181.249 kb on - strand, within Dsui_2975at 3181.249 kb on - strand, within Dsui_2975at 3181.269 kb on - strand, within Dsui_2975at 3181.336 kb on - strand, within Dsui_2975at 3181.362 kb on - strand, within Dsui_2975at 3181.367 kb on - strand, within Dsui_2975at 3181.428 kb on - strand, within Dsui_2975at 3181.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,178,233 + Dsui_2972 0.79 -0.1
3,178,241 + Dsui_2972 0.80 -0.0
3,178,241 + Dsui_2972 0.80 -0.3
3,178,441 - +0.8
3,178,457 - +0.8
3,178,486 + Dsui_2973 0.13 -0.2
3,178,726 + Dsui_2973 0.44 +0.2
3,178,936 + Dsui_2973 0.71 +0.2
3,178,969 + Dsui_2973 0.75 -0.6
3,179,151 + -0.1
3,179,182 + -0.9
3,179,237 - +0.8
3,179,406 + Dsui_2974 0.19 -2.6
3,179,429 - Dsui_2974 0.21 -0.2
3,179,509 - Dsui_2974 0.27 -0.2
3,179,509 - Dsui_2974 0.27 -2.2
3,179,612 - Dsui_2974 0.35 -1.6
3,179,625 - Dsui_2974 0.36 -0.8
3,179,637 + Dsui_2974 0.37 +0.8
3,179,734 + +0.8
3,179,766 + Dsui_2974 0.47 +0.8
3,179,856 - Dsui_2974 0.54 -0.2
3,179,941 + Dsui_2974 0.61 +0.8
3,179,941 + Dsui_2974 0.61 -1.8
3,180,019 - +0.8
3,180,019 - +0.8
3,180,057 + Dsui_2974 0.70 -1.8
3,180,057 + +0.8
3,180,071 - Dsui_2974 0.71 +0.8
3,180,221 - Dsui_2974 0.83 -0.2
3,180,356 + +0.8
3,180,364 - -0.2
3,180,472 + -0.2
3,180,627 - -1.2
3,180,876 - Dsui_2975 0.18 -0.8
3,180,881 - -0.2
3,180,954 + +0.8
3,181,058 + +0.8
3,181,091 + Dsui_2975 0.26 +0.8
3,181,249 - Dsui_2975 0.33 -0.8
3,181,249 - Dsui_2975 0.33 -0.8
3,181,269 - Dsui_2975 0.34 -0.8
3,181,336 - Dsui_2975 0.37 -0.2
3,181,362 - Dsui_2975 0.38 -1.2
3,181,367 - Dsui_2975 0.38 -2.2
3,181,428 - Dsui_2975 0.40 -0.2
3,181,429 - +0.8

Or see this region's nucleotide sequence