Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2960 and Dsui_2961 are separated by 3 nucleotides Dsui_2961 and Dsui_2962 overlap by 11 nucleotides Dsui_2962 and Dsui_2963 overlap by 8 nucleotides
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Dsui_2961: Dsui_2961 - precorrin isomerase, at 3,169,057 to 3,169,737
_2961
Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923
_2962
Dsui_2963: Dsui_2963 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, at 3,170,916 to 3,172,208
_2963
Position (kb)
3169
3170
3171 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3168.788 kb on + strand, within Dsui_2960 at 3169.054 kb on + strand at 3169.089 kb on + strand at 3169.097 kb on - strand at 3169.198 kb on + strand, within Dsui_2961 at 3169.278 kb on + strand, within Dsui_2961 at 3169.286 kb on - strand, within Dsui_2961 at 3169.404 kb on + strand, within Dsui_2961 at 3169.560 kb on + strand at 3169.640 kb on - strand at 3169.703 kb on + strand at 3169.716 kb on - strand at 3169.754 kb on + strand at 3169.754 kb on + strand at 3169.886 kb on - strand, within Dsui_2962 at 3169.886 kb on - strand, within Dsui_2962 at 3169.943 kb on - strand, within Dsui_2962 at 3170.159 kb on - strand at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.365 kb on + strand, within Dsui_2962 at 3170.429 kb on + strand, within Dsui_2962 at 3170.444 kb on + strand, within Dsui_2962 at 3170.533 kb on + strand, within Dsui_2962 at 3170.578 kb on + strand, within Dsui_2962 at 3170.598 kb on + strand, within Dsui_2962 at 3170.626 kb on - strand at 3170.643 kb on + strand, within Dsui_2962 at 3170.930 kb on + strand at 3170.938 kb on - strand at 3170.938 kb on - strand at 3171.217 kb on - strand at 3171.324 kb on - strand at 3171.566 kb on - strand, within Dsui_2963 at 3171.580 kb on + strand, within Dsui_2963 at 3171.737 kb on + strand, within Dsui_2963 at 3171.806 kb on + strand, within Dsui_2963 at 3171.806 kb on + strand, within Dsui_2963 at 3171.814 kb on - strand, within Dsui_2963
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,168,788 + Dsui_2960 0.73 -0.4 3,169,054 + -0.2 3,169,089 + -1.4 3,169,097 - -0.2 3,169,198 + Dsui_2961 0.21 +0.0 3,169,278 + Dsui_2961 0.32 -1.2 3,169,286 - Dsui_2961 0.34 -0.8 3,169,404 + Dsui_2961 0.51 +0.3 3,169,560 + -1.5 3,169,640 - +0.8 3,169,703 + -0.8 3,169,716 - +0.8 3,169,754 + +0.5 3,169,754 + +0.8 3,169,886 - Dsui_2962 0.13 -1.5 3,169,886 - Dsui_2962 0.13 -0.8 3,169,943 - Dsui_2962 0.18 -0.2 3,170,159 - +0.8 3,170,250 + Dsui_2962 0.44 -1.8 3,170,250 + Dsui_2962 0.44 -1.5 3,170,250 + Dsui_2962 0.44 -1.1 3,170,258 - -0.2 3,170,258 - +0.8 3,170,258 - -0.2 3,170,365 + Dsui_2962 0.53 -1.4 3,170,429 + Dsui_2962 0.59 -1.7 3,170,444 + Dsui_2962 0.60 +3.4 3,170,533 + Dsui_2962 0.67 -1.5 3,170,578 + Dsui_2962 0.71 -2.2 3,170,598 + Dsui_2962 0.73 -2.5 3,170,626 - -1.5 3,170,643 + Dsui_2962 0.77 +0.8 3,170,930 + +0.8 3,170,938 - +0.8 3,170,938 - +0.8 3,171,217 - -0.8 3,171,324 - -0.2 3,171,566 - Dsui_2963 0.50 -0.2 3,171,580 + Dsui_2963 0.51 -1.6 3,171,737 + Dsui_2963 0.63 -2.4 3,171,806 + Dsui_2963 0.69 +1.4 3,171,806 + Dsui_2963 0.69 -0.2 3,171,814 - Dsui_2963 0.69 +0.8
Or see this region's nucleotide sequence