Strain Fitness in Dechlorosoma suillum PS around Dsui_2918

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2915 and Dsui_2916 are separated by 172 nucleotidesDsui_2916 and Dsui_2917 overlap by 4 nucleotidesDsui_2917 and Dsui_2918 are separated by 32 nucleotidesDsui_2918 and Dsui_2919 are separated by 161 nucleotidesDsui_2919 and Dsui_2920 are separated by 47 nucleotides Dsui_2915: Dsui_2915 - o-succinylbenzoic acid synthetase, at 3,117,563 to 3,118,627 _2915 Dsui_2916: Dsui_2916 - hypothetical protein, at 3,118,800 to 3,119,177 _2916 Dsui_2917: Dsui_2917 - hypothetical protein, at 3,119,174 to 3,119,572 _2917 Dsui_2918: Dsui_2918 - hypothetical protein, at 3,119,605 to 3,120,285 _2918 Dsui_2919: Dsui_2919 - addiction module antidote protein, HigA family, at 3,120,447 to 3,120,761 _2919 Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239 _2920 Position (kb) 3119 3120 3121Strain fitness (log2 ratio) -2 -1 0 1at 3119.056 kb on + strandat 3119.192 kb on - strandat 3119.428 kb on - strandat 3119.428 kb on - strandat 3119.595 kb on - strandat 3119.595 kb on - strandat 3119.636 kb on + strandat 3119.700 kb on - strandat 3119.758 kb on - strandat 3119.987 kb on - strandat 3119.991 kb on + strandat 3120.110 kb on - strandat 3120.160 kb on - strandat 3120.367 kb on + strandat 3120.463 kb on + strandat 3120.465 kb on + strandat 3120.478 kb on + strandat 3120.486 kb on - strandat 3120.488 kb on + strand, within Dsui_2919at 3120.488 kb on + strandat 3120.598 kb on + strandat 3120.598 kb on + strand, within Dsui_2919at 3120.600 kb on + strand, within Dsui_2919at 3120.702 kb on + strand, within Dsui_2919at 3120.770 kb on + strandat 3120.850 kb on - strandat 3120.891 kb on + strandat 3120.891 kb on + strandat 3121.005 kb on + strand, within Dsui_2920at 3121.024 kb on + strand, within Dsui_2920at 3121.262 kb on - strandat 3121.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,119,056 + +0.8
3,119,192 - +0.8
3,119,428 - -0.2
3,119,428 - -0.2
3,119,595 - +0.8
3,119,595 - -0.2
3,119,636 + -0.8
3,119,700 - -1.2
3,119,758 - +0.8
3,119,987 - +0.8
3,119,991 + +0.8
3,120,110 - -0.2
3,120,160 - +0.8
3,120,367 + -0.2
3,120,463 + -1.8
3,120,465 + +0.8
3,120,478 + +0.8
3,120,486 - -0.8
3,120,488 + Dsui_2919 0.13 +0.8
3,120,488 + -0.2
3,120,598 + +0.8
3,120,598 + Dsui_2919 0.48 -0.2
3,120,600 + Dsui_2919 0.49 -1.5
3,120,702 + Dsui_2919 0.81 -1.5
3,120,770 + -1.2
3,120,850 - -1.5
3,120,891 + -1.3
3,120,891 + -0.7
3,121,005 + Dsui_2920 0.14 -0.9
3,121,024 + Dsui_2920 0.15 -1.4
3,121,262 - -0.2
3,121,267 - -1.2

Or see this region's nucleotide sequence