Strain Fitness in Dechlorosoma suillum PS around Dsui_2875

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2874 and Dsui_2875 are separated by 150 nucleotidesDsui_2875 and Dsui_2876 are separated by 2 nucleotides Dsui_2874: Dsui_2874 - putative periplasmic/secreted protein, at 3,068,162 to 3,068,845 _2874 Dsui_2875: Dsui_2875 - outer membrane protein, at 3,068,996 to 3,070,471 _2875 Dsui_2876: Dsui_2876 - RND family efflux transporter, MFP subunit, at 3,070,474 to 3,071,730 _2876 Position (kb) 3068 3069 3070 3071Strain fitness (log2 ratio) -2 -1 0 1at 3068.119 kb on + strandat 3068.194 kb on - strandat 3068.244 kb on + strand, within Dsui_2874at 3068.382 kb on + strand, within Dsui_2874at 3068.423 kb on + strand, within Dsui_2874at 3068.423 kb on + strand, within Dsui_2874at 3068.438 kb on + strand, within Dsui_2874at 3068.547 kb on + strand, within Dsui_2874at 3068.933 kb on - strandat 3068.971 kb on - strandat 3069.041 kb on - strandat 3069.278 kb on + strand, within Dsui_2875at 3069.377 kb on + strand, within Dsui_2875at 3069.482 kb on + strand, within Dsui_2875at 3069.482 kb on + strandat 3069.487 kb on + strand, within Dsui_2875at 3069.500 kb on - strandat 3069.500 kb on - strandat 3069.552 kb on + strand, within Dsui_2875at 3069.621 kb on + strand, within Dsui_2875at 3069.902 kb on + strand, within Dsui_2875at 3070.056 kb on + strand, within Dsui_2875at 3070.056 kb on + strand, within Dsui_2875at 3070.356 kb on + strandat 3070.363 kb on - strandat 3070.375 kb on - strandat 3070.375 kb on - strandat 3070.488 kb on + strandat 3070.617 kb on + strand, within Dsui_2876at 3070.680 kb on + strand, within Dsui_2876at 3070.689 kb on - strand, within Dsui_2876at 3070.772 kb on - strandat 3070.780 kb on + strand, within Dsui_2876at 3070.780 kb on + strand, within Dsui_2876at 3070.783 kb on + strand, within Dsui_2876at 3070.820 kb on + strand, within Dsui_2876at 3070.820 kb on + strand, within Dsui_2876at 3070.851 kb on + strand, within Dsui_2876at 3070.979 kb on - strandat 3071.069 kb on + strand, within Dsui_2876at 3071.069 kb on + strand, within Dsui_2876at 3071.120 kb on - strand, within Dsui_2876at 3071.304 kb on + strand, within Dsui_2876at 3071.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,068,119 + -0.4
3,068,194 - -2.6
3,068,244 + Dsui_2874 0.12 +0.4
3,068,382 + Dsui_2874 0.32 -1.1
3,068,423 + Dsui_2874 0.38 -0.7
3,068,423 + Dsui_2874 0.38 +0.5
3,068,438 + Dsui_2874 0.40 -0.5
3,068,547 + Dsui_2874 0.56 +1.5
3,068,933 - +0.9
3,068,971 - -0.1
3,069,041 - -0.1
3,069,278 + Dsui_2875 0.19 -0.6
3,069,377 + Dsui_2875 0.26 -1.2
3,069,482 + Dsui_2875 0.33 -0.8
3,069,482 + +0.9
3,069,487 + Dsui_2875 0.33 +0.2
3,069,500 - +0.9
3,069,500 - +0.9
3,069,552 + Dsui_2875 0.38 -1.4
3,069,621 + Dsui_2875 0.42 -0.1
3,069,902 + Dsui_2875 0.61 -0.5
3,070,056 + Dsui_2875 0.72 -1.1
3,070,056 + Dsui_2875 0.72 +1.5
3,070,356 + -0.5
3,070,363 - -0.1
3,070,375 - -0.1
3,070,375 - -0.1
3,070,488 + +0.9
3,070,617 + Dsui_2876 0.11 -0.1
3,070,680 + Dsui_2876 0.16 -0.4
3,070,689 - Dsui_2876 0.17 -0.1
3,070,772 - -0.1
3,070,780 + Dsui_2876 0.24 -0.4
3,070,780 + Dsui_2876 0.24 -0.3
3,070,783 + Dsui_2876 0.25 +0.5
3,070,820 + Dsui_2876 0.28 -0.0
3,070,820 + Dsui_2876 0.28 -0.4
3,070,851 + Dsui_2876 0.30 -0.5
3,070,979 - -1.1
3,071,069 + Dsui_2876 0.47 -0.7
3,071,069 + Dsui_2876 0.47 -1.7
3,071,120 - Dsui_2876 0.51 -0.7
3,071,304 + Dsui_2876 0.66 -0.7
3,071,385 - -1.1

Or see this region's nucleotide sequence