Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2396 and Dsui_2397 are separated by 112 nucleotides Dsui_2397 and Dsui_2398 are separated by 25 nucleotides Dsui_2398 and Dsui_2399 are separated by 62 nucleotides Dsui_2399 and Dsui_2400 are separated by 4 nucleotides
Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951
_2396
Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780
_2397
Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801
_2398
Dsui_2399: Dsui_2399 - membrane-associated phospholipid phosphatase, at 2,551,864 to 2,552,514
_2399
Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847
_2400
Position (kb)
2550
2551
2552 Strain fitness (log2 ratio)
-2
-1
0
1 at 2549.853 kb on + strand, within Dsui_2396 at 2549.915 kb on - strand at 2549.938 kb on + strand at 2550.036 kb on + strand at 2550.044 kb on + strand at 2550.049 kb on + strand at 2550.049 kb on + strand at 2550.059 kb on + strand at 2550.066 kb on + strand at 2550.093 kb on + strand at 2550.148 kb on + strand, within Dsui_2397 at 2550.206 kb on + strand, within Dsui_2397 at 2550.230 kb on + strand, within Dsui_2397 at 2550.357 kb on + strand, within Dsui_2397 at 2550.377 kb on + strand, within Dsui_2397 at 2550.379 kb on - strand at 2550.420 kb on - strand at 2550.460 kb on - strand, within Dsui_2397 at 2550.566 kb on + strand, within Dsui_2397 at 2550.566 kb on + strand, within Dsui_2397 at 2550.590 kb on + strand at 2550.603 kb on - strand, within Dsui_2397 at 2550.654 kb on - strand, within Dsui_2397 at 2550.723 kb on + strand at 2550.978 kb on + strand at 2550.986 kb on - strand, within Dsui_2398 at 2551.000 kb on - strand, within Dsui_2398 at 2551.000 kb on - strand at 2551.104 kb on - strand, within Dsui_2398 at 2551.114 kb on - strand, within Dsui_2398 at 2551.136 kb on - strand, within Dsui_2398 at 2551.225 kb on - strand, within Dsui_2398 at 2551.226 kb on - strand at 2551.285 kb on + strand at 2551.510 kb on - strand at 2551.544 kb on + strand at 2551.634 kb on + strand, within Dsui_2398 at 2551.704 kb on + strand at 2551.941 kb on - strand at 2552.101 kb on - strand, within Dsui_2399 at 2552.124 kb on - strand at 2552.160 kb on - strand at 2552.170 kb on - strand at 2552.174 kb on + strand at 2552.316 kb on - strand, within Dsui_2399 at 2552.629 kb on + strand at 2552.632 kb on - strand at 2552.714 kb on - strand, within Dsui_2400
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,549,853 + Dsui_2396 0.88 +0.6 2,549,915 - +0.8 2,549,938 + -0.5 2,550,036 + -0.5 2,550,044 + +0.3 2,550,049 + -0.1 2,550,049 + -0.5 2,550,059 + +0.1 2,550,066 + -0.3 2,550,093 + -0.8 2,550,148 + Dsui_2397 0.12 -2.1 2,550,206 + Dsui_2397 0.20 -1.4 2,550,230 + Dsui_2397 0.23 -2.4 2,550,357 + Dsui_2397 0.41 -1.2 2,550,377 + Dsui_2397 0.44 -2.0 2,550,379 - -0.8 2,550,420 - -0.2 2,550,460 - Dsui_2397 0.55 -0.8 2,550,566 + Dsui_2397 0.70 -0.2 2,550,566 + Dsui_2397 0.70 -0.2 2,550,590 + +0.8 2,550,603 - Dsui_2397 0.75 -2.7 2,550,654 - Dsui_2397 0.82 -0.2 2,550,723 + +0.8 2,550,978 + +0.8 2,550,986 - Dsui_2398 0.18 -1.5 2,551,000 - Dsui_2398 0.19 +0.8 2,551,000 - +0.8 2,551,104 - Dsui_2398 0.30 +0.8 2,551,114 - Dsui_2398 0.31 +0.8 2,551,136 - Dsui_2398 0.33 +0.8 2,551,225 - Dsui_2398 0.42 +0.8 2,551,226 - +0.8 2,551,285 + +0.8 2,551,510 - +0.8 2,551,544 + +0.8 2,551,634 + Dsui_2398 0.83 -1.2 2,551,704 + -1.5 2,551,941 - +0.8 2,552,101 - Dsui_2399 0.36 -0.8 2,552,124 - -0.2 2,552,160 - +0.8 2,552,170 - +0.8 2,552,174 + -0.2 2,552,316 - Dsui_2399 0.69 +0.8 2,552,629 + +0.8 2,552,632 - +1.5 2,552,714 - Dsui_2400 0.15 -0.8
Or see this region's nucleotide sequence