Strain Fitness in Dechlorosoma suillum PS around Dsui_2339

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2336 and Dsui_2337 are separated by 383 nucleotidesDsui_2337 and Dsui_2339 are separated by 254 nucleotidesDsui_2339 and Dsui_2340 are separated by 4 nucleotides Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743 _2336 Dsui_2337: Dsui_2337 - putative Fe-S oxidoreductase, at 2,490,127 to 2,490,468 _2337 Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634 _2339 Dsui_2340: Dsui_2340 - ABC-type multidrug transport system, permease component, at 2,491,639 to 2,492,772 _2340 Position (kb) 2490 2491 2492Strain fitness (log2 ratio) -2 -1 0 1at 2489.805 kb on - strandat 2489.859 kb on + strandat 2489.986 kb on + strandat 2490.040 kb on + strandat 2490.087 kb on + strandat 2490.523 kb on + strandat 2490.523 kb on + strandat 2490.613 kb on + strandat 2490.674 kb on + strandat 2490.692 kb on + strandat 2490.743 kb on - strandat 2490.812 kb on + strandat 2490.812 kb on + strandat 2490.812 kb on + strandat 2490.820 kb on - strandat 2490.820 kb on - strandat 2490.850 kb on + strand, within Dsui_2339at 2490.990 kb on - strand, within Dsui_2339at 2491.033 kb on + strand, within Dsui_2339at 2491.041 kb on + strandat 2491.051 kb on + strand, within Dsui_2339at 2491.087 kb on - strandat 2491.190 kb on - strand, within Dsui_2339at 2491.240 kb on - strandat 2491.431 kb on - strandat 2491.539 kb on + strand, within Dsui_2339at 2491.613 kb on + strandat 2491.675 kb on + strandat 2491.676 kb on - strandat 2491.729 kb on + strandat 2491.764 kb on - strand, within Dsui_2340at 2491.794 kb on - strand, within Dsui_2340at 2491.799 kb on - strand, within Dsui_2340at 2491.801 kb on - strand, within Dsui_2340at 2491.814 kb on - strand, within Dsui_2340at 2491.857 kb on + strand, within Dsui_2340at 2491.903 kb on - strand, within Dsui_2340at 2491.928 kb on + strand, within Dsui_2340at 2491.952 kb on + strand, within Dsui_2340at 2491.965 kb on + strand, within Dsui_2340at 2491.973 kb on + strand, within Dsui_2340at 2491.976 kb on - strand, within Dsui_2340at 2491.981 kb on - strand, within Dsui_2340at 2492.042 kb on - strandat 2492.042 kb on - strand, within Dsui_2340at 2492.042 kb on - strand, within Dsui_2340at 2492.042 kb on - strand, within Dsui_2340at 2492.189 kb on - strand, within Dsui_2340at 2492.204 kb on - strand, within Dsui_2340at 2492.310 kb on + strandat 2492.487 kb on - strand, within Dsui_2340at 2492.624 kb on - strand, within Dsui_2340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
2,489,805 - -1.6
2,489,859 + +0.8
2,489,986 + +0.8
2,490,040 + +0.8
2,490,087 + -1.5
2,490,523 + -0.2
2,490,523 + -0.2
2,490,613 + +0.0
2,490,674 + -0.2
2,490,692 + -0.1
2,490,743 - +0.8
2,490,812 + -0.2
2,490,812 + +0.8
2,490,812 + -0.2
2,490,820 - +0.8
2,490,820 - +0.8
2,490,850 + Dsui_2339 0.14 -0.8
2,490,990 - Dsui_2339 0.29 -1.2
2,491,033 + Dsui_2339 0.34 -0.2
2,491,041 + +0.8
2,491,051 + Dsui_2339 0.36 -1.5
2,491,087 - -0.8
2,491,190 - Dsui_2339 0.51 -1.5
2,491,240 - -1.5
2,491,431 - +0.8
2,491,539 + Dsui_2339 0.89 -0.2
2,491,613 + -1.2
2,491,675 + -0.8
2,491,676 - +0.8
2,491,729 + -0.2
2,491,764 - Dsui_2340 0.11 +0.8
2,491,794 - Dsui_2340 0.14 +0.8
2,491,799 - Dsui_2340 0.14 -0.2
2,491,801 - Dsui_2340 0.14 -0.2
2,491,814 - Dsui_2340 0.15 -2.0
2,491,857 + Dsui_2340 0.19 -0.2
2,491,903 - Dsui_2340 0.23 +0.8
2,491,928 + Dsui_2340 0.25 -1.4
2,491,952 + Dsui_2340 0.28 +0.8
2,491,965 + Dsui_2340 0.29 -0.2
2,491,973 + Dsui_2340 0.29 -0.8
2,491,976 - Dsui_2340 0.30 +0.8
2,491,981 - Dsui_2340 0.30 -2.0
2,492,042 - +0.8
2,492,042 - Dsui_2340 0.36 +0.8
2,492,042 - Dsui_2340 0.36 -2.2
2,492,042 - Dsui_2340 0.36 -0.2
2,492,189 - Dsui_2340 0.49 +0.8
2,492,204 - Dsui_2340 0.50 +0.8
2,492,310 + -0.8
2,492,487 - Dsui_2340 0.75 -2.0
2,492,624 - Dsui_2340 0.87 -0.2

Or see this region's nucleotide sequence