Strain Fitness in Dechlorosoma suillum PS around Dsui_1445

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1443 and Dsui_1444 are separated by 233 nucleotidesDsui_1444 and Dsui_1445 are separated by 51 nucleotidesDsui_1445 and Dsui_1446 are separated by 11 nucleotides Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455 _1443 Dsui_1444: Dsui_1444 - Protein of unknown function (DUF2889), at 1,499,689 to 1,500,240 _1444 Dsui_1445: Dsui_1445 - succinyl-CoA synthetase, beta subunit, at 1,500,292 to 1,501,452 _1445 Dsui_1446: Dsui_1446 - succinyl-CoA synthetase, alpha subunit, at 1,501,464 to 1,502,360 _1446 Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1499.331 kb on - strandat 1499.662 kb on - strandat 1499.828 kb on + strand, within Dsui_1444at 1499.864 kb on + strand, within Dsui_1444at 1499.929 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.968 kb on + strand, within Dsui_1444at 1499.968 kb on + strand, within Dsui_1444at 1499.976 kb on - strandat 1499.976 kb on - strand, within Dsui_1444at 1499.986 kb on + strand, within Dsui_1444at 1499.987 kb on + strand, within Dsui_1444at 1500.040 kb on + strand, within Dsui_1444at 1500.040 kb on + strand, within Dsui_1444at 1500.058 kb on - strand, within Dsui_1444at 1500.058 kb on - strand, within Dsui_1444at 1500.069 kb on + strand, within Dsui_1444at 1500.102 kb on - strandat 1500.193 kb on + strandat 1500.201 kb on - strandat 1500.201 kb on - strandat 1500.243 kb on - strandat 1500.249 kb on + strandat 1500.249 kb on + strandat 1500.312 kb on + strandat 1500.362 kb on - strandat 1500.643 kb on + strand, within Dsui_1445at 1500.643 kb on + strand, within Dsui_1445at 1500.643 kb on + strand, within Dsui_1445at 1500.651 kb on - strand, within Dsui_1445at 1500.770 kb on + strand, within Dsui_1445at 1500.923 kb on - strand, within Dsui_1445at 1501.115 kb on + strand, within Dsui_1445at 1501.123 kb on - strand, within Dsui_1445at 1501.229 kb on - strand, within Dsui_1445at 1501.412 kb on + strandat 1501.448 kb on + strandat 1501.448 kb on + strandat 1501.456 kb on - strandat 1501.493 kb on + strandat 1501.493 kb on + strandat 1501.628 kb on + strand, within Dsui_1446at 1501.861 kb on + strand, within Dsui_1446at 1501.869 kb on - strand, within Dsui_1446at 1502.006 kb on + strand, within Dsui_1446at 1502.052 kb on - strand, within Dsui_1446at 1502.261 kb on - strand, within Dsui_1446

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,499,331 - -1.6
1,499,662 - +0.7
1,499,828 + Dsui_1444 0.25 -0.2
1,499,864 + Dsui_1444 0.32 -0.3
1,499,929 + Dsui_1444 0.43 -0.4
1,499,939 + Dsui_1444 0.45 -0.1
1,499,939 + Dsui_1444 0.45 -0.1
1,499,939 + Dsui_1444 0.45 -0.5
1,499,939 + Dsui_1444 0.45 +0.1
1,499,968 + Dsui_1444 0.51 -0.2
1,499,968 + Dsui_1444 0.51 +0.1
1,499,976 - +0.7
1,499,976 - Dsui_1444 0.52 -0.9
1,499,986 + Dsui_1444 0.54 -0.2
1,499,987 + Dsui_1444 0.54 -0.1
1,500,040 + Dsui_1444 0.64 -0.1
1,500,040 + Dsui_1444 0.64 -0.2
1,500,058 - Dsui_1444 0.67 -0.9
1,500,058 - Dsui_1444 0.67 -1.3
1,500,069 + Dsui_1444 0.69 -0.2
1,500,102 - +0.7
1,500,193 + -0.3
1,500,201 - -0.3
1,500,201 - +0.7
1,500,243 - +0.7
1,500,249 + -2.6
1,500,249 + -1.5
1,500,312 + -0.6
1,500,362 - +0.7
1,500,643 + Dsui_1445 0.30 -3.2
1,500,643 + Dsui_1445 0.30 -3.1
1,500,643 + Dsui_1445 0.30 -3.5
1,500,651 - Dsui_1445 0.31 +0.7
1,500,770 + Dsui_1445 0.41 -2.3
1,500,923 - Dsui_1445 0.54 +0.7
1,501,115 + Dsui_1445 0.71 -3.6
1,501,123 - Dsui_1445 0.72 +0.7
1,501,229 - Dsui_1445 0.81 -0.3
1,501,412 + -5.0
1,501,448 + -2.7
1,501,448 + -2.9
1,501,456 - -0.3
1,501,493 + -3.6
1,501,493 + -5.1
1,501,628 + Dsui_1446 0.18 -4.5
1,501,861 + Dsui_1446 0.44 -1.6
1,501,869 - Dsui_1446 0.45 -0.3
1,502,006 + Dsui_1446 0.60 -5.1
1,502,052 - Dsui_1446 0.66 +0.7
1,502,261 - Dsui_1446 0.89 -0.9

Or see this region's nucleotide sequence