Strain Fitness in Dechlorosoma suillum PS around Dsui_1044

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1043 and Dsui_1044 are separated by 47 nucleotidesDsui_1044 and Dsui_1045 are separated by 13 nucleotidesDsui_1045 and Dsui_1046 are separated by 4 nucleotides Dsui_1043: Dsui_1043 - quinolinate synthetase complex, A subunit, at 1,074,567 to 1,075,664 _1043 Dsui_1044: Dsui_1044 - hypothetical protein, at 1,075,712 to 1,078,858 _1044 Dsui_1045: Dsui_1045 - hypothetical protein, at 1,078,872 to 1,079,318 _1045 Dsui_1046: Dsui_1046 - hypothetical protein, at 1,079,323 to 1,080,141 _1046 Position (kb) 1075 1076 1077 1078 1079Strain fitness (log2 ratio) -2 -1 0 1at 1075.715 kb on - strandat 1075.761 kb on - strandat 1075.866 kb on + strandat 1075.888 kb on + strandat 1075.888 kb on + strandat 1075.896 kb on - strandat 1075.952 kb on + strandat 1075.993 kb on + strandat 1075.993 kb on + strandat 1076.058 kb on - strandat 1076.162 kb on - strand, within Dsui_1044at 1076.162 kb on - strandat 1076.230 kb on + strandat 1076.238 kb on - strand, within Dsui_1044at 1076.240 kb on - strand, within Dsui_1044at 1076.249 kb on + strandat 1076.336 kb on - strandat 1076.362 kb on + strandat 1076.370 kb on - strand, within Dsui_1044at 1076.370 kb on - strand, within Dsui_1044at 1076.392 kb on - strand, within Dsui_1044at 1076.414 kb on + strand, within Dsui_1044at 1076.563 kb on + strandat 1076.566 kb on - strand, within Dsui_1044at 1076.571 kb on - strand, within Dsui_1044at 1076.592 kb on - strand, within Dsui_1044at 1076.613 kb on + strand, within Dsui_1044at 1076.613 kb on + strand, within Dsui_1044at 1076.621 kb on - strand, within Dsui_1044at 1076.684 kb on - strand, within Dsui_1044at 1076.716 kb on + strandat 1076.781 kb on - strand, within Dsui_1044at 1076.814 kb on - strand, within Dsui_1044at 1076.977 kb on - strand, within Dsui_1044at 1076.978 kb on + strand, within Dsui_1044at 1077.016 kb on + strand, within Dsui_1044at 1077.053 kb on + strand, within Dsui_1044at 1077.092 kb on - strand, within Dsui_1044at 1077.101 kb on - strand, within Dsui_1044at 1077.106 kb on - strandat 1077.117 kb on + strand, within Dsui_1044at 1077.242 kb on - strandat 1077.314 kb on - strand, within Dsui_1044at 1077.335 kb on + strand, within Dsui_1044at 1077.425 kb on - strand, within Dsui_1044at 1077.430 kb on - strand, within Dsui_1044at 1077.688 kb on - strand, within Dsui_1044at 1077.839 kb on + strand, within Dsui_1044at 1077.917 kb on - strandat 1077.999 kb on - strandat 1078.035 kb on - strand, within Dsui_1044at 1078.040 kb on + strand, within Dsui_1044at 1078.059 kb on + strandat 1078.285 kb on + strand, within Dsui_1044at 1078.415 kb on - strandat 1078.422 kb on + strand, within Dsui_1044at 1078.499 kb on - strandat 1078.567 kb on + strandat 1078.590 kb on - strandat 1078.594 kb on - strandat 1078.622 kb on + strandat 1078.645 kb on - strandat 1078.710 kb on - strandat 1078.718 kb on - strandat 1078.720 kb on + strandat 1078.728 kb on - strandat 1078.733 kb on + strandat 1078.748 kb on + strandat 1078.752 kb on - strandat 1078.762 kb on + strandat 1078.766 kb on + strandat 1078.820 kb on + strandat 1078.833 kb on - strandat 1078.835 kb on + strandat 1078.836 kb on + strandat 1078.909 kb on + strandat 1079.011 kb on + strand, within Dsui_1045at 1079.025 kb on - strand, within Dsui_1045at 1079.046 kb on - strand, within Dsui_1045at 1079.089 kb on + strand, within Dsui_1045at 1079.097 kb on + strand, within Dsui_1045at 1079.185 kb on - strand, within Dsui_1045at 1079.185 kb on - strand, within Dsui_1045at 1079.245 kb on + strand, within Dsui_1045at 1079.264 kb on + strand, within Dsui_1045at 1079.315 kb on - strandat 1079.361 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.370 kb on - strandat 1079.370 kb on - strandat 1079.430 kb on + strand, within Dsui_1046at 1079.446 kb on + strandat 1079.591 kb on - strand, within Dsui_1046at 1079.624 kb on + strand, within Dsui_1046at 1079.624 kb on + strandat 1079.654 kb on + strand, within Dsui_1046at 1079.654 kb on + strand, within Dsui_1046at 1079.654 kb on + strand, within Dsui_1046at 1079.664 kb on - strand, within Dsui_1046at 1079.694 kb on - strand, within Dsui_1046at 1079.752 kb on + strand, within Dsui_1046at 1079.754 kb on - strandat 1079.776 kb on - strand, within Dsui_1046at 1079.781 kb on + strand, within Dsui_1046at 1079.837 kb on + strand, within Dsui_1046

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,075,715 - +0.0
1,075,761 - -0.8
1,075,866 + +0.8
1,075,888 + +0.8
1,075,888 + +0.8
1,075,896 - -1.2
1,075,952 + -0.2
1,075,993 + +0.8
1,075,993 + -0.8
1,076,058 - -0.2
1,076,162 - Dsui_1044 0.14 -1.8
1,076,162 - -0.8
1,076,230 + -1.5
1,076,238 - Dsui_1044 0.17 -1.5
1,076,240 - Dsui_1044 0.17 +0.8
1,076,249 + +0.8
1,076,336 - +0.8
1,076,362 + +0.8
1,076,370 - Dsui_1044 0.21 -1.2
1,076,370 - Dsui_1044 0.21 +0.8
1,076,392 - Dsui_1044 0.22 +0.8
1,076,414 + Dsui_1044 0.22 -2.5
1,076,563 + -0.2
1,076,566 - Dsui_1044 0.27 -0.2
1,076,571 - Dsui_1044 0.27 +0.8
1,076,592 - Dsui_1044 0.28 -0.8
1,076,613 + Dsui_1044 0.29 +0.8
1,076,613 + Dsui_1044 0.29 -0.8
1,076,621 - Dsui_1044 0.29 -0.2
1,076,684 - Dsui_1044 0.31 +0.8
1,076,716 + +0.8
1,076,781 - Dsui_1044 0.34 -1.5
1,076,814 - Dsui_1044 0.35 -0.2
1,076,977 - Dsui_1044 0.40 -0.2
1,076,978 + Dsui_1044 0.40 -0.2
1,077,016 + Dsui_1044 0.41 -1.8
1,077,053 + Dsui_1044 0.43 +1.4
1,077,092 - Dsui_1044 0.44 -1.2
1,077,101 - Dsui_1044 0.44 -1.2
1,077,106 - +0.8
1,077,117 + Dsui_1044 0.45 -2.2
1,077,242 - +0.8
1,077,314 - Dsui_1044 0.51 -1.5
1,077,335 + Dsui_1044 0.52 -1.5
1,077,425 - Dsui_1044 0.54 -0.8
1,077,430 - Dsui_1044 0.55 -1.5
1,077,688 - Dsui_1044 0.63 -0.2
1,077,839 + Dsui_1044 0.68 +0.8
1,077,917 - -0.2
1,077,999 - -0.8
1,078,035 - Dsui_1044 0.74 -1.5
1,078,040 + Dsui_1044 0.74 -1.2
1,078,059 + -0.2
1,078,285 + Dsui_1044 0.82 +0.8
1,078,415 - -0.8
1,078,422 + Dsui_1044 0.86 -1.5
1,078,499 - -0.2
1,078,567 + -0.8
1,078,590 - +0.8
1,078,594 - +0.8
1,078,622 + -1.5
1,078,645 - -0.8
1,078,710 - -0.8
1,078,718 - +0.8
1,078,720 + +0.8
1,078,728 - -0.8
1,078,733 + -0.8
1,078,748 + -0.8
1,078,752 - +0.8
1,078,762 + -1.2
1,078,766 + +0.8
1,078,820 + -0.8
1,078,833 - -1.2
1,078,835 + -0.8
1,078,836 + +0.8
1,078,909 + +0.8
1,079,011 + Dsui_1045 0.31 -1.5
1,079,025 - Dsui_1045 0.34 -2.5
1,079,046 - Dsui_1045 0.39 -2.4
1,079,089 + Dsui_1045 0.49 -1.4
1,079,097 + Dsui_1045 0.50 +0.8
1,079,185 - Dsui_1045 0.70 -0.8
1,079,185 - Dsui_1045 0.70 -0.2
1,079,245 + Dsui_1045 0.83 -2.2
1,079,264 + Dsui_1045 0.88 -1.5
1,079,315 - -0.8
1,079,361 + +0.8
1,079,362 + -0.2
1,079,362 + -0.4
1,079,362 + -2.4
1,079,362 + +0.8
1,079,362 + -0.8
1,079,370 - -0.8
1,079,370 - -0.2
1,079,430 + Dsui_1046 0.13 +0.8
1,079,446 + +0.8
1,079,591 - Dsui_1046 0.33 +0.8
1,079,624 + Dsui_1046 0.37 -2.3
1,079,624 + +0.8
1,079,654 + Dsui_1046 0.40 +0.7
1,079,654 + Dsui_1046 0.40 +0.2
1,079,654 + Dsui_1046 0.40 -0.1
1,079,664 - Dsui_1046 0.42 -0.7
1,079,694 - Dsui_1046 0.45 +0.8
1,079,752 + Dsui_1046 0.52 +0.8
1,079,754 - +0.8
1,079,776 - Dsui_1046 0.55 -1.8
1,079,781 + Dsui_1046 0.56 -1.2
1,079,837 + Dsui_1046 0.63 -0.2

Or see this region's nucleotide sequence