Strain Fitness in Dechlorosoma suillum PS around Dsui_0922

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0921 and Dsui_0922 are separated by 97 nucleotidesDsui_0922 and Dsui_0923 are separated by 29 nucleotides Dsui_0921: Dsui_0921 - PAS domain S-box, at 944,617 to 948,909 _0921 Dsui_0922: Dsui_0922 - outer membrane receptor protein, at 949,007 to 951,028 _0922 Dsui_0923: Dsui_0923 - putative iron-regulated membrane protein, at 951,058 to 952,206 _0923 Position (kb) 949 950 951 952Strain fitness (log2 ratio) -2 -1 0 1at 948.018 kb on + strandat 948.146 kb on - strand, within Dsui_0921at 948.150 kb on + strand, within Dsui_0921at 948.203 kb on - strand, within Dsui_0921at 948.299 kb on + strand, within Dsui_0921at 948.317 kb on - strand, within Dsui_0921at 948.451 kb on + strand, within Dsui_0921at 948.616 kb on + strandat 948.616 kb on + strandat 948.624 kb on - strandat 948.678 kb on + strandat 948.693 kb on - strandat 948.711 kb on - strandat 948.770 kb on + strandat 948.812 kb on + strandat 948.951 kb on + strandat 948.959 kb on - strandat 948.959 kb on - strandat 948.964 kb on - strandat 948.970 kb on + strandat 949.105 kb on - strandat 949.123 kb on - strandat 949.134 kb on - strandat 949.144 kb on - strandat 949.250 kb on - strandat 949.275 kb on - strandat 949.561 kb on + strand, within Dsui_0922at 949.569 kb on - strand, within Dsui_0922at 949.569 kb on - strand, within Dsui_0922at 949.675 kb on + strand, within Dsui_0922at 949.790 kb on - strand, within Dsui_0922at 949.879 kb on + strand, within Dsui_0922at 949.879 kb on + strand, within Dsui_0922at 949.879 kb on + strand, within Dsui_0922at 949.887 kb on - strand, within Dsui_0922at 949.902 kb on - strand, within Dsui_0922at 950.033 kb on - strand, within Dsui_0922at 950.244 kb on + strand, within Dsui_0922at 950.307 kb on - strand, within Dsui_0922at 950.399 kb on - strand, within Dsui_0922at 950.400 kb on - strand, within Dsui_0922at 950.415 kb on + strand, within Dsui_0922at 950.415 kb on + strand, within Dsui_0922at 950.447 kb on - strand, within Dsui_0922at 950.805 kb on + strand, within Dsui_0922at 950.974 kb on + strandat 951.030 kb on - strandat 951.056 kb on + strandat 951.189 kb on - strandat 951.208 kb on - strand, within Dsui_0923at 951.252 kb on - strand, within Dsui_0923at 951.467 kb on - strand, within Dsui_0923at 951.527 kb on + strand, within Dsui_0923at 951.638 kb on - strandat 951.657 kb on - strand, within Dsui_0923at 951.761 kb on - strand, within Dsui_0923at 951.761 kb on - strand, within Dsui_0923at 951.782 kb on - strand, within Dsui_0923at 951.943 kb on - strand, within Dsui_0923at 952.022 kb on + strand, within Dsui_0923at 952.027 kb on + strandat 952.027 kb on + strand, within Dsui_0923

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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948,018 + +0.8
948,146 - Dsui_0921 0.82 +0.8
948,150 + Dsui_0921 0.82 -0.4
948,203 - Dsui_0921 0.84 -0.2
948,299 + Dsui_0921 0.86 -1.5
948,317 - Dsui_0921 0.86 -1.2
948,451 + Dsui_0921 0.89 +0.5
948,616 + -0.5
948,616 + -0.8
948,624 - -2.5
948,678 + +0.8
948,693 - +0.8
948,711 - -0.8
948,770 + -1.5
948,812 + +0.8
948,951 + -1.5
948,959 - -1.2
948,959 - +0.8
948,964 - -0.2
948,970 + +0.8
949,105 - +0.8
949,123 - +0.8
949,134 - -2.0
949,144 - +0.8
949,250 - +0.8
949,275 - +0.8
949,561 + Dsui_0922 0.27 -2.0
949,569 - Dsui_0922 0.28 -0.2
949,569 - Dsui_0922 0.28 -1.2
949,675 + Dsui_0922 0.33 -0.8
949,790 - Dsui_0922 0.39 -0.8
949,879 + Dsui_0922 0.43 -0.2
949,879 + Dsui_0922 0.43 -0.2
949,879 + Dsui_0922 0.43 +0.8
949,887 - Dsui_0922 0.44 +0.8
949,902 - Dsui_0922 0.44 +0.8
950,033 - Dsui_0922 0.51 -0.8
950,244 + Dsui_0922 0.61 -1.2
950,307 - Dsui_0922 0.64 -0.2
950,399 - Dsui_0922 0.69 +0.8
950,400 - Dsui_0922 0.69 +0.8
950,415 + Dsui_0922 0.70 -1.5
950,415 + Dsui_0922 0.70 +0.8
950,447 - Dsui_0922 0.71 +0.8
950,805 + Dsui_0922 0.89 -0.2
950,974 + -0.2
951,030 - +0.8
951,056 + +0.8
951,189 - +0.8
951,208 - Dsui_0923 0.13 -1.5
951,252 - Dsui_0923 0.17 +0.8
951,467 - Dsui_0923 0.36 -0.8
951,527 + Dsui_0923 0.41 -1.2
951,638 - +0.8
951,657 - Dsui_0923 0.52 +0.8
951,761 - Dsui_0923 0.61 -0.8
951,761 - Dsui_0923 0.61 -1.2
951,782 - Dsui_0923 0.63 -1.5
951,943 - Dsui_0923 0.77 +0.2
952,022 + Dsui_0923 0.84 -1.5
952,027 + +0.8
952,027 + Dsui_0923 0.84 -0.2

Or see this region's nucleotide sequence