Strain Fitness in Dechlorosoma suillum PS around Dsui_0639

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0637 and Dsui_0638 overlap by 4 nucleotidesDsui_0638 and Dsui_0639 are separated by 107 nucleotidesDsui_0639 and Dsui_0640 are separated by 182 nucleotides Dsui_0637: Dsui_0637 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 631,201 to 631,875 _0637 Dsui_0638: Dsui_0638 - ABC-type polar amino acid transport system, ATPase component, at 631,872 to 632,600 _0638 Dsui_0639: Dsui_0639 - hypothetical protein, at 632,708 to 632,929 _0639 Dsui_0640: Dsui_0640 - 5,10-methylenetetrahydrofolate reductase, at 633,112 to 633,951 _0640 Position (kb) 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 631.917 kb on - strandat 631.941 kb on - strandat 631.962 kb on - strand, within Dsui_0638at 631.990 kb on + strand, within Dsui_0638at 631.998 kb on - strand, within Dsui_0638at 632.000 kb on + strand, within Dsui_0638at 632.026 kb on + strand, within Dsui_0638at 632.104 kb on - strand, within Dsui_0638at 632.177 kb on + strand, within Dsui_0638at 632.177 kb on + strand, within Dsui_0638at 632.184 kb on + strand, within Dsui_0638at 632.185 kb on - strand, within Dsui_0638at 632.185 kb on - strand, within Dsui_0638at 632.209 kb on - strand, within Dsui_0638at 632.214 kb on + strand, within Dsui_0638at 632.221 kb on + strand, within Dsui_0638at 632.386 kb on + strand, within Dsui_0638at 632.594 kb on + strandat 632.594 kb on + strandat 632.594 kb on + strandat 632.602 kb on - strandat 632.692 kb on - strandat 632.737 kb on - strand, within Dsui_0639at 632.744 kb on + strand, within Dsui_0639at 632.747 kb on - strand, within Dsui_0639at 632.888 kb on + strand, within Dsui_0639at 632.935 kb on - strandat 632.983 kb on - strandat 633.062 kb on + strandat 633.062 kb on + strandat 633.062 kb on + strandat 633.070 kb on - strandat 633.070 kb on - strandat 633.070 kb on - strandat 633.077 kb on - strandat 633.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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631,917 - +0.8
631,941 - +1.8
631,962 - Dsui_0638 0.12 -0.2
631,990 + Dsui_0638 0.16 -0.7
631,998 - Dsui_0638 0.17 +0.8
632,000 + Dsui_0638 0.18 -0.2
632,026 + Dsui_0638 0.21 -1.0
632,104 - Dsui_0638 0.32 +0.8
632,177 + Dsui_0638 0.42 +0.3
632,177 + Dsui_0638 0.42 -0.5
632,184 + Dsui_0638 0.43 -0.5
632,185 - Dsui_0638 0.43 +0.8
632,185 - Dsui_0638 0.43 -0.2
632,209 - Dsui_0638 0.46 -2.2
632,214 + Dsui_0638 0.47 -0.2
632,221 + Dsui_0638 0.48 -0.3
632,386 + Dsui_0638 0.71 -0.1
632,594 + -0.5
632,594 + -0.1
632,594 + -0.1
632,602 - -2.8
632,692 - -0.5
632,737 - Dsui_0639 0.13 -0.1
632,744 + Dsui_0639 0.16 -0.5
632,747 - Dsui_0639 0.18 -0.0
632,888 + Dsui_0639 0.81 +1.1
632,935 - -0.3
632,983 - +0.4
633,062 + -1.2
633,062 + -0.1
633,062 + -0.8
633,070 - +0.1
633,070 - -0.0
633,070 - +0.0
633,077 - +0.1
633,118 - -0.0

Or see this region's nucleotide sequence