Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0531 and Dsui_0532 are separated by 58 nucleotides Dsui_0532 and Dsui_0533 are separated by 116 nucleotides Dsui_0533 and Dsui_0534 are separated by 7 nucleotides Dsui_0534 and Dsui_0535 are separated by 31 nucleotides Dsui_0535 and Dsui_0536 are separated by 10 nucleotides
Dsui_0531: Dsui_0531 - ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component, at 536,937 to 537,707
_0531
Dsui_0532: Dsui_0532 - cob(I)alamin adenosyltransferase, at 537,766 to 538,368
_0532
Dsui_0533: Dsui_0533 - cobyrinic acid a,c-diamide synthase, at 538,485 to 539,792
_0533
Dsui_0534: Dsui_0534 - hypothetical protein, at 539,800 to 540,027
_0534
Dsui_0535: Dsui_0535 - hypothetical protein, at 540,059 to 540,304
_0535
Dsui_0536: Dsui_0536 - hemerythrin-like metal-binding domain-containing protein, at 540,315 to 541,775
_0536
Position (kb)
538
539
540 Strain fitness (log2 ratio)
-2
-1
0
1 at 537.645 kb on + strand at 537.677 kb on - strand at 537.682 kb on - strand at 537.836 kb on - strand at 537.899 kb on - strand, within Dsui_0532 at 537.899 kb on - strand, within Dsui_0532 at 537.937 kb on - strand, within Dsui_0532 at 538.014 kb on + strand, within Dsui_0532 at 538.053 kb on - strand, within Dsui_0532 at 538.132 kb on - strand, within Dsui_0532 at 538.172 kb on - strand, within Dsui_0532 at 538.212 kb on - strand, within Dsui_0532 at 538.325 kb on + strand at 538.538 kb on + strand at 538.565 kb on + strand at 538.779 kb on + strand, within Dsui_0533 at 538.843 kb on + strand, within Dsui_0533 at 538.876 kb on + strand, within Dsui_0533 at 538.902 kb on - strand at 538.986 kb on - strand at 539.061 kb on + strand, within Dsui_0533 at 539.409 kb on - strand, within Dsui_0533 at 539.521 kb on + strand, within Dsui_0533 at 539.577 kb on - strand at 539.689 kb on + strand at 539.719 kb on - strand at 540.029 kb on - strand at 540.029 kb on - strand at 540.039 kb on + strand at 540.094 kb on - strand, within Dsui_0535 at 540.199 kb on + strand, within Dsui_0535 at 540.444 kb on + strand at 540.537 kb on + strand, within Dsui_0536 at 540.671 kb on - strand, within Dsui_0536 at 540.734 kb on + strand, within Dsui_0536 at 540.767 kb on - strand, within Dsui_0536 at 540.787 kb on - strand, within Dsui_0536
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 537,645 + -0.3 537,677 - -2.1 537,682 - -1.3 537,836 - +0.7 537,899 - Dsui_0532 0.22 -1.6 537,899 - Dsui_0532 0.22 -1.6 537,937 - Dsui_0532 0.28 +0.7 538,014 + Dsui_0532 0.41 +0.7 538,053 - Dsui_0532 0.48 -1.9 538,132 - Dsui_0532 0.61 -2.6 538,172 - Dsui_0532 0.67 +0.7 538,212 - Dsui_0532 0.74 +0.7 538,325 + +0.7 538,538 + -0.9 538,565 + +0.7 538,779 + Dsui_0533 0.22 -0.9 538,843 + Dsui_0533 0.27 -0.9 538,876 + Dsui_0533 0.30 -1.9 538,902 - -0.9 538,986 - +0.7 539,061 + Dsui_0533 0.44 -1.6 539,409 - Dsui_0533 0.71 +0.7 539,521 + Dsui_0533 0.79 -0.9 539,577 - +0.7 539,689 + +0.7 539,719 - +0.7 540,029 - -0.3 540,029 - -0.3 540,039 + -1.6 540,094 - Dsui_0535 0.14 -0.3 540,199 + Dsui_0535 0.57 +0.0 540,444 + +0.0 540,537 + Dsui_0536 0.15 -0.6 540,671 - Dsui_0536 0.24 -1.6 540,734 + Dsui_0536 0.29 -1.3 540,767 - Dsui_0536 0.31 -1.9 540,787 - Dsui_0536 0.32 -0.9
Or see this region's nucleotide sequence