Strain Fitness in Dechlorosoma suillum PS around Dsui_0533

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0531 and Dsui_0532 are separated by 58 nucleotidesDsui_0532 and Dsui_0533 are separated by 116 nucleotidesDsui_0533 and Dsui_0534 are separated by 7 nucleotidesDsui_0534 and Dsui_0535 are separated by 31 nucleotidesDsui_0535 and Dsui_0536 are separated by 10 nucleotides Dsui_0531: Dsui_0531 - ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component, at 536,937 to 537,707 _0531 Dsui_0532: Dsui_0532 - cob(I)alamin adenosyltransferase, at 537,766 to 538,368 _0532 Dsui_0533: Dsui_0533 - cobyrinic acid a,c-diamide synthase, at 538,485 to 539,792 _0533 Dsui_0534: Dsui_0534 - hypothetical protein, at 539,800 to 540,027 _0534 Dsui_0535: Dsui_0535 - hypothetical protein, at 540,059 to 540,304 _0535 Dsui_0536: Dsui_0536 - hemerythrin-like metal-binding domain-containing protein, at 540,315 to 541,775 _0536 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1at 537.645 kb on + strandat 537.677 kb on - strandat 537.682 kb on - strandat 537.836 kb on - strandat 537.899 kb on - strand, within Dsui_0532at 537.899 kb on - strand, within Dsui_0532at 537.937 kb on - strand, within Dsui_0532at 538.014 kb on + strand, within Dsui_0532at 538.053 kb on - strand, within Dsui_0532at 538.132 kb on - strand, within Dsui_0532at 538.172 kb on - strand, within Dsui_0532at 538.212 kb on - strand, within Dsui_0532at 538.325 kb on + strandat 538.538 kb on + strandat 538.565 kb on + strandat 538.779 kb on + strand, within Dsui_0533at 538.843 kb on + strand, within Dsui_0533at 538.876 kb on + strand, within Dsui_0533at 538.902 kb on - strandat 538.986 kb on - strandat 539.061 kb on + strand, within Dsui_0533at 539.409 kb on - strand, within Dsui_0533at 539.521 kb on + strand, within Dsui_0533at 539.577 kb on - strandat 539.689 kb on + strandat 539.719 kb on - strandat 540.029 kb on - strandat 540.029 kb on - strandat 540.039 kb on + strandat 540.094 kb on - strand, within Dsui_0535at 540.199 kb on + strand, within Dsui_0535at 540.444 kb on + strandat 540.537 kb on + strand, within Dsui_0536at 540.671 kb on - strand, within Dsui_0536at 540.734 kb on + strand, within Dsui_0536at 540.767 kb on - strand, within Dsui_0536at 540.787 kb on - strand, within Dsui_0536

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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537,645 + -0.3
537,677 - -2.1
537,682 - -1.3
537,836 - +0.7
537,899 - Dsui_0532 0.22 -1.6
537,899 - Dsui_0532 0.22 -1.6
537,937 - Dsui_0532 0.28 +0.7
538,014 + Dsui_0532 0.41 +0.7
538,053 - Dsui_0532 0.48 -1.9
538,132 - Dsui_0532 0.61 -2.6
538,172 - Dsui_0532 0.67 +0.7
538,212 - Dsui_0532 0.74 +0.7
538,325 + +0.7
538,538 + -0.9
538,565 + +0.7
538,779 + Dsui_0533 0.22 -0.9
538,843 + Dsui_0533 0.27 -0.9
538,876 + Dsui_0533 0.30 -1.9
538,902 - -0.9
538,986 - +0.7
539,061 + Dsui_0533 0.44 -1.6
539,409 - Dsui_0533 0.71 +0.7
539,521 + Dsui_0533 0.79 -0.9
539,577 - +0.7
539,689 + +0.7
539,719 - +0.7
540,029 - -0.3
540,029 - -0.3
540,039 + -1.6
540,094 - Dsui_0535 0.14 -0.3
540,199 + Dsui_0535 0.57 +0.0
540,444 + +0.0
540,537 + Dsui_0536 0.15 -0.6
540,671 - Dsui_0536 0.24 -1.6
540,734 + Dsui_0536 0.29 -1.3
540,767 - Dsui_0536 0.31 -1.9
540,787 - Dsui_0536 0.32 -0.9

Or see this region's nucleotide sequence