Strain Fitness in Dechlorosoma suillum PS around Dsui_0128

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0127 and Dsui_0128 are separated by 81 nucleotidesDsui_0128 and Dsui_0129 are separated by 116 nucleotides Dsui_0127: Dsui_0127 - transcriptional regulator, at 125,053 to 125,886 _0127 Dsui_0128: Dsui_0128 - D-alanyl-D-alanine carboxypeptidase, at 125,968 to 126,987 _0128 Dsui_0129: Dsui_0129 - putative esterase of the alpha-beta hydrolase superfamily, at 127,104 to 128,285 _0129 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1at 125.014 kb on - strandat 125.072 kb on + strandat 125.080 kb on - strandat 125.135 kb on + strandat 125.204 kb on + strand, within Dsui_0127at 125.204 kb on + strand, within Dsui_0127at 125.204 kb on + strand, within Dsui_0127at 125.212 kb on - strand, within Dsui_0127at 125.217 kb on + strand, within Dsui_0127at 125.217 kb on + strand, within Dsui_0127at 125.240 kb on - strand, within Dsui_0127at 125.266 kb on + strand, within Dsui_0127at 125.309 kb on + strand, within Dsui_0127at 125.383 kb on - strand, within Dsui_0127at 125.388 kb on - strand, within Dsui_0127at 125.399 kb on - strand, within Dsui_0127at 125.411 kb on + strand, within Dsui_0127at 125.429 kb on + strand, within Dsui_0127at 125.482 kb on - strand, within Dsui_0127at 125.514 kb on + strand, within Dsui_0127at 125.536 kb on - strand, within Dsui_0127at 125.541 kb on - strand, within Dsui_0127at 125.556 kb on + strand, within Dsui_0127at 125.556 kb on + strand, within Dsui_0127at 125.564 kb on - strand, within Dsui_0127at 125.816 kb on + strandat 125.837 kb on + strandat 125.857 kb on + strandat 125.857 kb on + strandat 125.858 kb on - strandat 125.862 kb on + strandat 125.875 kb on - strandat 126.085 kb on - strand, within Dsui_0128at 126.143 kb on + strandat 126.151 kb on - strand, within Dsui_0128at 126.151 kb on - strand, within Dsui_0128at 126.151 kb on - strand, within Dsui_0128at 126.173 kb on + strand, within Dsui_0128at 126.221 kb on + strand, within Dsui_0128at 126.233 kb on + strand, within Dsui_0128at 126.271 kb on + strandat 126.279 kb on - strand, within Dsui_0128at 126.284 kb on + strand, within Dsui_0128at 126.298 kb on - strand, within Dsui_0128at 126.406 kb on + strand, within Dsui_0128at 126.438 kb on + strand, within Dsui_0128at 126.439 kb on + strand, within Dsui_0128at 126.466 kb on + strand, within Dsui_0128at 126.534 kb on + strand, within Dsui_0128at 126.534 kb on + strand, within Dsui_0128at 126.541 kb on - strand, within Dsui_0128at 126.603 kb on + strandat 126.603 kb on + strandat 126.656 kb on - strand, within Dsui_0128at 126.680 kb on + strand, within Dsui_0128at 126.688 kb on - strand, within Dsui_0128at 126.688 kb on - strand, within Dsui_0128at 126.704 kb on - strand, within Dsui_0128at 126.715 kb on - strand, within Dsui_0128at 126.720 kb on - strand, within Dsui_0128at 126.727 kb on + strand, within Dsui_0128at 126.774 kb on + strand, within Dsui_0128at 126.782 kb on - strand, within Dsui_0128at 126.782 kb on - strand, within Dsui_0128at 126.842 kb on + strand, within Dsui_0128at 126.850 kb on - strand, within Dsui_0128at 126.896 kb on + strandat 126.904 kb on - strandat 126.904 kb on - strandat 126.953 kb on + strandat 126.963 kb on - strandat 127.009 kb on + strandat 127.010 kb on + strandat 127.018 kb on - strandat 127.021 kb on + strandat 127.042 kb on + strandat 127.042 kb on + strandat 127.052 kb on - strandat 127.101 kb on + strandat 127.101 kb on + strandat 127.108 kb on - strandat 127.112 kb on + strandat 127.120 kb on - strandat 127.120 kb on - strandat 127.120 kb on - strandat 127.120 kb on - strandat 127.122 kb on + strandat 127.143 kb on + strandat 127.146 kb on - strandat 127.146 kb on - strandat 127.161 kb on + strandat 127.169 kb on - strandat 127.181 kb on + strandat 127.210 kb on - strandat 127.210 kb on - strandat 127.268 kb on - strand, within Dsui_0129at 127.270 kb on + strandat 127.315 kb on - strand, within Dsui_0129at 127.346 kb on - strand, within Dsui_0129at 127.387 kb on - strand, within Dsui_0129at 127.474 kb on - strand, within Dsui_0129at 127.502 kb on - strand, within Dsui_0129at 127.570 kb on + strandat 127.578 kb on - strand, within Dsui_0129at 127.659 kb on + strand, within Dsui_0129at 127.659 kb on + strandat 127.667 kb on - strand, within Dsui_0129at 127.689 kb on + strand, within Dsui_0129at 127.689 kb on - strand, within Dsui_0129at 127.760 kb on - strandat 127.804 kb on + strand, within Dsui_0129at 127.828 kb on + strand, within Dsui_0129at 127.887 kb on + strand, within Dsui_0129at 127.899 kb on + strand, within Dsui_0129

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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125,014 - +0.6
125,072 + -0.5
125,080 - +0.6
125,135 + -0.1
125,204 + Dsui_0127 0.18 -0.4
125,204 + Dsui_0127 0.18 -0.2
125,204 + Dsui_0127 0.18 -0.6
125,212 - Dsui_0127 0.19 -0.9
125,217 + Dsui_0127 0.20 -0.1
125,217 + Dsui_0127 0.20 -0.3
125,240 - Dsui_0127 0.22 -0.4
125,266 + Dsui_0127 0.26 -0.4
125,309 + Dsui_0127 0.31 -0.0
125,383 - Dsui_0127 0.40 -2.4
125,388 - Dsui_0127 0.40 -2.2
125,399 - Dsui_0127 0.41 +0.6
125,411 + Dsui_0127 0.43 +0.1
125,429 + Dsui_0127 0.45 -0.9
125,482 - Dsui_0127 0.51 +0.6
125,514 + Dsui_0127 0.55 +0.0
125,536 - Dsui_0127 0.58 +0.6
125,541 - Dsui_0127 0.59 +0.6
125,556 + Dsui_0127 0.60 -0.4
125,556 + Dsui_0127 0.60 -0.4
125,564 - Dsui_0127 0.61 -2.4
125,816 + -0.3
125,837 + -0.3
125,857 + -0.2
125,857 + -0.7
125,858 - -3.3
125,862 + -0.2
125,875 - -2.5
126,085 - Dsui_0128 0.11 +0.0
126,143 + +0.6
126,151 - Dsui_0128 0.18 +0.3
126,151 - Dsui_0128 0.18 +0.3
126,151 - Dsui_0128 0.18 +0.3
126,173 + Dsui_0128 0.20 +0.6
126,221 + Dsui_0128 0.25 -1.9
126,233 + Dsui_0128 0.26 -1.4
126,271 + -0.4
126,279 - Dsui_0128 0.30 +0.1
126,284 + Dsui_0128 0.31 +0.6
126,298 - Dsui_0128 0.32 +0.2
126,406 + Dsui_0128 0.43 -1.7
126,438 + Dsui_0128 0.46 +0.6
126,439 + Dsui_0128 0.46 -0.4
126,466 + Dsui_0128 0.49 -0.9
126,534 + Dsui_0128 0.55 -0.4
126,534 + Dsui_0128 0.55 -2.4
126,541 - Dsui_0128 0.56 +0.2
126,603 + -0.9
126,603 + -0.4
126,656 - Dsui_0128 0.67 -0.1
126,680 + Dsui_0128 0.70 +0.6
126,688 - Dsui_0128 0.71 +0.6
126,688 - Dsui_0128 0.71 +0.3
126,704 - Dsui_0128 0.72 +0.1
126,715 - Dsui_0128 0.73 -0.2
126,720 - Dsui_0128 0.74 +0.2
126,727 + Dsui_0128 0.74 -0.9
126,774 + Dsui_0128 0.79 -0.9
126,782 - Dsui_0128 0.80 +0.0
126,782 - Dsui_0128 0.80 +0.1
126,842 + Dsui_0128 0.86 -0.9
126,850 - Dsui_0128 0.86 +0.0
126,896 + +0.6
126,904 - -0.0
126,904 - +0.0
126,953 + +0.6
126,963 - +0.3
127,009 + +0.6
127,010 + +0.6
127,018 - +0.1
127,021 + +0.6
127,042 + +0.6
127,042 + +0.6
127,052 - +0.6
127,101 + -0.4
127,101 + -0.1
127,108 - -0.4
127,112 + +0.6
127,120 - -0.9
127,120 - +0.6
127,120 - -3.1
127,120 - -0.9
127,122 + -0.4
127,143 + -1.9
127,146 - -1.4
127,146 - -1.5
127,161 + +0.6
127,169 - -0.9
127,181 + -0.4
127,210 - -0.7
127,210 - -0.4
127,268 - Dsui_0129 0.14 -0.5
127,270 + +0.6
127,315 - Dsui_0129 0.18 -1.7
127,346 - Dsui_0129 0.20 +0.6
127,387 - Dsui_0129 0.24 -1.7
127,474 - Dsui_0129 0.31 +0.6
127,502 - Dsui_0129 0.34 -1.7
127,570 + +0.6
127,578 - Dsui_0129 0.40 -2.4
127,659 + Dsui_0129 0.47 +0.6
127,659 + -0.4
127,667 - Dsui_0129 0.48 -0.4
127,689 + Dsui_0129 0.49 -2.2
127,689 - Dsui_0129 0.49 -0.4
127,760 - +0.6
127,804 + Dsui_0129 0.59 -1.4
127,828 + Dsui_0129 0.61 -1.7
127,887 + Dsui_0129 0.66 +0.6
127,899 + Dsui_0129 0.67 -1.7

Or see this region's nucleotide sequence