Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03136

Experiment: PYE 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03135 and CCNA_03136 are separated by 2 nucleotidesCCNA_03136 and CCNA_03137 are separated by 1 nucleotides CCNA_03135: CCNA_03135 - flagellum-specific ATP synthase fliL, at 3,282,810 to 3,284,144 _03135 CCNA_03136: CCNA_03136 - flagellar export protein FliJ, at 3,284,147 to 3,284,566 _03136 CCNA_03137: CCNA_03137 - endo-1,4-beta-xylanase, at 3,284,568 to 3,285,626 _03137 CCNA_03986: CCNA_03986 - hypothetical protein, at 3,285,449 to 3,285,835 _03986 Position (kb) 3284 3285Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3283.147 kb on + strand, within CCNA_03135at 3283.160 kb on + strand, within CCNA_03135at 3283.160 kb on + strand, within CCNA_03135at 3283.175 kb on - strand, within CCNA_03135at 3283.228 kb on + strand, within CCNA_03135at 3283.236 kb on - strand, within CCNA_03135at 3283.236 kb on - strand, within CCNA_03135at 3283.240 kb on - strand, within CCNA_03135at 3283.291 kb on - strand, within CCNA_03135at 3283.328 kb on + strand, within CCNA_03135at 3283.340 kb on + strand, within CCNA_03135at 3283.340 kb on + strand, within CCNA_03135at 3283.340 kb on + strand, within CCNA_03135at 3283.343 kb on - strand, within CCNA_03135at 3283.348 kb on - strand, within CCNA_03135at 3283.348 kb on - strand, within CCNA_03135at 3283.391 kb on + strand, within CCNA_03135at 3283.427 kb on + strand, within CCNA_03135at 3283.437 kb on + strand, within CCNA_03135at 3283.437 kb on + strand, within CCNA_03135at 3283.440 kb on - strand, within CCNA_03135at 3283.445 kb on - strand, within CCNA_03135at 3283.482 kb on + strand, within CCNA_03135at 3283.482 kb on + strand, within CCNA_03135at 3283.511 kb on - strand, within CCNA_03135at 3283.512 kb on + strand, within CCNA_03135at 3283.544 kb on + strand, within CCNA_03135at 3283.544 kb on + strand, within CCNA_03135at 3283.544 kb on + strand, within CCNA_03135at 3283.562 kb on - strand, within CCNA_03135at 3283.588 kb on + strand, within CCNA_03135at 3283.598 kb on + strand, within CCNA_03135at 3283.640 kb on + strand, within CCNA_03135at 3283.643 kb on + strand, within CCNA_03135at 3283.648 kb on - strand, within CCNA_03135at 3283.670 kb on + strand, within CCNA_03135at 3283.682 kb on + strand, within CCNA_03135at 3283.685 kb on - strand, within CCNA_03135at 3283.740 kb on + strand, within CCNA_03135at 3283.740 kb on + strand, within CCNA_03135at 3283.747 kb on + strand, within CCNA_03135at 3283.750 kb on - strand, within CCNA_03135at 3283.752 kb on + strand, within CCNA_03135at 3283.806 kb on + strand, within CCNA_03135at 3283.814 kb on - strand, within CCNA_03135at 3283.835 kb on + strand, within CCNA_03135at 3283.843 kb on - strand, within CCNA_03135at 3283.843 kb on - strand, within CCNA_03135at 3283.977 kb on + strand, within CCNA_03135at 3284.032 kb on + strandat 3284.056 kb on + strandat 3284.072 kb on + strandat 3284.072 kb on + strandat 3284.072 kb on + strandat 3284.080 kb on - strandat 3284.127 kb on + strandat 3284.160 kb on - strandat 3284.199 kb on - strand, within CCNA_03136at 3284.233 kb on + strand, within CCNA_03136at 3284.295 kb on - strand, within CCNA_03136at 3284.308 kb on + strand, within CCNA_03136at 3284.419 kb on + strand, within CCNA_03136at 3284.425 kb on + strand, within CCNA_03136at 3284.473 kb on + strand, within CCNA_03136at 3284.473 kb on + strand, within CCNA_03136at 3284.473 kb on + strand, within CCNA_03136at 3284.479 kb on + strand, within CCNA_03136at 3284.605 kb on + strandat 3284.605 kb on - strandat 3284.634 kb on + strandat 3284.634 kb on + strandat 3284.634 kb on + strandat 3284.634 kb on + strandat 3284.634 kb on - strandat 3284.661 kb on + strandat 3284.685 kb on - strand, within CCNA_03137at 3284.757 kb on + strand, within CCNA_03137at 3284.762 kb on + strand, within CCNA_03137at 3284.789 kb on + strandat 3284.798 kb on - strand, within CCNA_03137at 3284.807 kb on - strand, within CCNA_03137at 3284.807 kb on - strand, within CCNA_03137at 3284.831 kb on + strand, within CCNA_03137at 3284.866 kb on + strand, within CCNA_03137at 3284.874 kb on - strand, within CCNA_03137at 3284.881 kb on + strand, within CCNA_03137at 3284.881 kb on + strand, within CCNA_03137at 3284.881 kb on + strand, within CCNA_03137at 3284.886 kb on + strand, within CCNA_03137at 3284.889 kb on - strand, within CCNA_03137at 3284.900 kb on - strand, within CCNA_03137at 3284.900 kb on - strand, within CCNA_03137at 3284.901 kb on + strand, within CCNA_03137at 3284.902 kb on + strand, within CCNA_03137at 3284.910 kb on - strand, within CCNA_03137at 3284.939 kb on + strand, within CCNA_03137at 3285.021 kb on - strand, within CCNA_03137at 3285.049 kb on + strand, within CCNA_03137at 3285.057 kb on - strand, within CCNA_03137at 3285.106 kb on - strand, within CCNA_03137at 3285.147 kb on + strand, within CCNA_03137at 3285.147 kb on + strand, within CCNA_03137at 3285.155 kb on - strand, within CCNA_03137at 3285.220 kb on - strand, within CCNA_03137at 3285.225 kb on + strand, within CCNA_03137at 3285.268 kb on + strand, within CCNA_03137at 3285.273 kb on + strand, within CCNA_03137at 3285.274 kb on + strand, within CCNA_03137at 3285.295 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.357 kb on - strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.449 kb on - strandat 3285.449 kb on - strandat 3285.449 kb on - strandat 3285.451 kb on + strandat 3285.451 kb on + strandat 3285.454 kb on - strandat 3285.454 kb on - strandat 3285.459 kb on - strandat 3285.459 kb on - strandat 3285.459 kb on - strandat 3285.464 kb on - strandat 3285.475 kb on + strandat 3285.481 kb on - strandat 3285.490 kb on + strandat 3285.496 kb on - strandat 3285.511 kb on + strandat 3285.511 kb on + strandat 3285.544 kb on + strandat 3285.554 kb on + strandat 3285.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep3 12 days
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3,283,147 + CCNA_03135 0.25 -1.8
3,283,160 + CCNA_03135 0.26 -0.8
3,283,160 + CCNA_03135 0.26 -3.1
3,283,175 - CCNA_03135 0.27 +0.8
3,283,228 + CCNA_03135 0.31 -0.4
3,283,236 - CCNA_03135 0.32 -2.5
3,283,236 - CCNA_03135 0.32 -0.2
3,283,240 - CCNA_03135 0.32 +0.4
3,283,291 - CCNA_03135 0.36 -0.6
3,283,328 + CCNA_03135 0.39 +0.2
3,283,340 + CCNA_03135 0.40 -2.6
3,283,340 + CCNA_03135 0.40 -1.0
3,283,340 + CCNA_03135 0.40 -1.7
3,283,343 - CCNA_03135 0.40 +2.4
3,283,348 - CCNA_03135 0.40 +0.6
3,283,348 - CCNA_03135 0.40 +0.0
3,283,391 + CCNA_03135 0.44 -2.0
3,283,427 + CCNA_03135 0.46 -2.0
3,283,437 + CCNA_03135 0.47 -1.0
3,283,437 + CCNA_03135 0.47 -2.9
3,283,440 - CCNA_03135 0.47 +2.4
3,283,445 - CCNA_03135 0.48 +1.4
3,283,482 + CCNA_03135 0.50 -1.6
3,283,482 + CCNA_03135 0.50 -1.1
3,283,511 - CCNA_03135 0.53 +1.4
3,283,512 + CCNA_03135 0.53 -2.3
3,283,544 + CCNA_03135 0.55 -3.4
3,283,544 + CCNA_03135 0.55 -0.8
3,283,544 + CCNA_03135 0.55 -0.4
3,283,562 - CCNA_03135 0.56 -0.4
3,283,588 + CCNA_03135 0.58 -0.5
3,283,598 + CCNA_03135 0.59 -0.2
3,283,640 + CCNA_03135 0.62 +2.4
3,283,643 + CCNA_03135 0.62 -1.5
3,283,648 - CCNA_03135 0.63 -1.6
3,283,670 + CCNA_03135 0.64 -2.3
3,283,682 + CCNA_03135 0.65 -4.1
3,283,685 - CCNA_03135 0.66 -1.0
3,283,740 + CCNA_03135 0.70 -1.1
3,283,740 + CCNA_03135 0.70 -1.5
3,283,747 + CCNA_03135 0.70 -2.3
3,283,750 - CCNA_03135 0.70 +0.4
3,283,752 + CCNA_03135 0.71 -2.2
3,283,806 + CCNA_03135 0.75 -2.0
3,283,814 - CCNA_03135 0.75 -0.4
3,283,835 + CCNA_03135 0.77 -1.0
3,283,843 - CCNA_03135 0.77 -0.4
3,283,843 - CCNA_03135 0.77 -1.6
3,283,977 + CCNA_03135 0.87 -0.8
3,284,032 + -1.9
3,284,056 + -1.0
3,284,072 + -1.0
3,284,072 + -2.7
3,284,072 + -2.3
3,284,080 - +0.0
3,284,127 + +0.0
3,284,160 - +0.8
3,284,199 - CCNA_03136 0.12 +0.4
3,284,233 + CCNA_03136 0.20 -1.1
3,284,295 - CCNA_03136 0.35 +0.0
3,284,308 + CCNA_03136 0.38 -3.9
3,284,419 + CCNA_03136 0.65 -1.7
3,284,425 + CCNA_03136 0.66 -1.6
3,284,473 + CCNA_03136 0.78 -1.3
3,284,473 + CCNA_03136 0.78 +0.0
3,284,473 + CCNA_03136 0.78 -2.5
3,284,479 + CCNA_03136 0.79 -0.6
3,284,605 + +0.3
3,284,605 - -2.3
3,284,634 + -0.2
3,284,634 + -0.4
3,284,634 + +0.6
3,284,634 + +0.5
3,284,634 - +0.2
3,284,661 + +0.0
3,284,685 - CCNA_03137 0.11 -2.6
3,284,757 + CCNA_03137 0.18 +0.5
3,284,762 + CCNA_03137 0.18 +0.5
3,284,789 + +1.1
3,284,798 - CCNA_03137 0.22 +0.6
3,284,807 - CCNA_03137 0.23 -0.3
3,284,807 - CCNA_03137 0.23 +0.4
3,284,831 + CCNA_03137 0.25 -0.5
3,284,866 + CCNA_03137 0.28 +0.4
3,284,874 - CCNA_03137 0.29 +0.0
3,284,881 + CCNA_03137 0.30 -0.4
3,284,881 + CCNA_03137 0.30 +0.4
3,284,881 + CCNA_03137 0.30 +0.1
3,284,886 + CCNA_03137 0.30 -0.7
3,284,889 - CCNA_03137 0.30 -0.4
3,284,900 - CCNA_03137 0.31 +1.3
3,284,900 - CCNA_03137 0.31 +0.8
3,284,901 + CCNA_03137 0.31 +0.5
3,284,902 + CCNA_03137 0.32 -0.5
3,284,910 - CCNA_03137 0.32 -0.3
3,284,939 + CCNA_03137 0.35 +0.4
3,285,021 - CCNA_03137 0.43 +0.3
3,285,049 + CCNA_03137 0.45 +0.1
3,285,057 - CCNA_03137 0.46 -0.4
3,285,106 - CCNA_03137 0.51 +0.0
3,285,147 + CCNA_03137 0.55 +0.3
3,285,147 + CCNA_03137 0.55 +0.3
3,285,155 - CCNA_03137 0.55 +1.6
3,285,220 - CCNA_03137 0.62 -0.0
3,285,225 + CCNA_03137 0.62 +0.8
3,285,268 + CCNA_03137 0.66 +0.1
3,285,273 + CCNA_03137 0.67 +0.4
3,285,274 + CCNA_03137 0.67 +0.3
3,285,295 + CCNA_03137 0.69 +0.6
3,285,328 + CCNA_03137 0.72 -0.4
3,285,328 + CCNA_03137 0.72 -0.0
3,285,328 + CCNA_03137 0.72 -0.3
3,285,328 + CCNA_03137 0.72 -0.3
3,285,328 + CCNA_03137 0.72 +0.3
3,285,328 + CCNA_03137 0.72 -0.2
3,285,336 - CCNA_03137 0.73 -0.6
3,285,336 - CCNA_03137 0.73 -0.9
3,285,336 - CCNA_03137 0.73 -0.6
3,285,336 - CCNA_03137 0.73 -1.1
3,285,357 - CCNA_03137 0.75 -0.8
3,285,446 + CCNA_03137 0.83 -1.1
3,285,446 + CCNA_03137 0.83 +0.9
3,285,446 + CCNA_03137 0.83 -1.0
3,285,446 + CCNA_03137 0.83 -0.1
3,285,449 - +0.4
3,285,449 - -0.1
3,285,449 - +0.8
3,285,451 + +1.1
3,285,451 + +2.6
3,285,454 - -0.2
3,285,454 - -0.5
3,285,459 - -0.1
3,285,459 - -0.2
3,285,459 - +0.2
3,285,464 - -0.2
3,285,475 + -0.3
3,285,481 - +1.1
3,285,490 + +0.0
3,285,496 - +0.8
3,285,511 + -0.4
3,285,511 + -0.4
3,285,544 + -0.7
3,285,554 + -0.3
3,285,557 - -1.2

Or see this region's nucleotide sequence