Experiment: PYE 30C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01852 and CCNA_01853 are separated by 92 nucleotides CCNA_01853 and CCNA_01854 are separated by 144 nucleotides CCNA_01854 and CCNA_01855 are separated by 129 nucleotides
CCNA_01852: CCNA_01852 - major facilitator superfamily transporter, at 1,983,992 to 1,985,332
_01852
CCNA_01853: CCNA_01853 - hypothetical protein, at 1,985,425 to 1,985,829
_01853
CCNA_01854: CCNA_01854 - GntR-family transcriptional regulator, at 1,985,974 to 1,986,639
_01854
CCNA_01855: CCNA_01855 - iron/manganese superoxide dismutase, at 1,986,769 to 1,987,485
_01855
Position (kb)
1985
1986 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1984.427 kb on - strand, within CCNA_01852 at 1984.432 kb on - strand, within CCNA_01852 at 1984.451 kb on + strand, within CCNA_01852 at 1984.451 kb on + strand, within CCNA_01852 at 1984.486 kb on + strand, within CCNA_01852 at 1984.607 kb on + strand, within CCNA_01852 at 1984.690 kb on + strand, within CCNA_01852 at 1984.766 kb on + strand, within CCNA_01852 at 1984.805 kb on + strand, within CCNA_01852 at 1984.834 kb on + strand, within CCNA_01852 at 1984.834 kb on + strand, within CCNA_01852 at 1984.834 kb on + strand, within CCNA_01852 at 1984.834 kb on + strand, within CCNA_01852 at 1984.842 kb on - strand, within CCNA_01852 at 1984.842 kb on - strand, within CCNA_01852 at 1984.842 kb on - strand, within CCNA_01852 at 1984.842 kb on - strand, within CCNA_01852 at 1984.868 kb on + strand, within CCNA_01852 at 1984.884 kb on + strand, within CCNA_01852 at 1984.884 kb on + strand, within CCNA_01852 at 1984.892 kb on - strand, within CCNA_01852 at 1984.894 kb on + strand, within CCNA_01852 at 1984.894 kb on + strand, within CCNA_01852 at 1984.894 kb on + strand, within CCNA_01852 at 1984.958 kb on - strand, within CCNA_01852 at 1984.999 kb on + strand, within CCNA_01852 at 1985.004 kb on + strand, within CCNA_01852 at 1985.007 kb on - strand, within CCNA_01852 at 1985.042 kb on + strand, within CCNA_01852 at 1985.113 kb on + strand, within CCNA_01852 at 1985.113 kb on + strand, within CCNA_01852 at 1985.123 kb on - strand, within CCNA_01852 at 1985.131 kb on + strand, within CCNA_01852 at 1985.132 kb on + strand, within CCNA_01852 at 1985.137 kb on + strand, within CCNA_01852 at 1985.142 kb on + strand, within CCNA_01852 at 1985.146 kb on - strand, within CCNA_01852 at 1985.153 kb on + strand, within CCNA_01852 at 1985.161 kb on - strand, within CCNA_01852 at 1985.197 kb on - strand, within CCNA_01852 at 1985.198 kb on - strand, within CCNA_01852 at 1985.211 kb on - strand at 1985.224 kb on + strand at 1985.227 kb on - strand at 1985.246 kb on + strand at 1985.326 kb on + strand at 1985.326 kb on + strand at 1985.334 kb on - strand at 1985.334 kb on - strand at 1985.338 kb on + strand at 1985.397 kb on + strand at 1985.419 kb on - strand at 1985.422 kb on + strand at 1985.430 kb on - strand at 1985.528 kb on + strand, within CCNA_01853 at 1985.536 kb on - strand, within CCNA_01853 at 1985.605 kb on - strand, within CCNA_01853 at 1985.608 kb on + strand, within CCNA_01853 at 1985.616 kb on - strand, within CCNA_01853 at 1985.646 kb on + strand, within CCNA_01853 at 1985.646 kb on + strand, within CCNA_01853 at 1985.699 kb on + strand, within CCNA_01853 at 1985.707 kb on - strand, within CCNA_01853 at 1985.720 kb on + strand, within CCNA_01853 at 1985.725 kb on + strand, within CCNA_01853 at 1985.744 kb on + strand at 1985.766 kb on + strand, within CCNA_01853 at 1985.766 kb on + strand, within CCNA_01853 at 1985.768 kb on + strand, within CCNA_01853 at 1985.870 kb on + strand at 1985.870 kb on + strand at 1985.884 kb on + strand at 1985.897 kb on - strand at 1985.922 kb on - strand at 1985.922 kb on - strand at 1985.922 kb on - strand at 1985.938 kb on + strand at 1985.946 kb on - strand at 1985.946 kb on - strand at 1985.976 kb on + strand at 1985.986 kb on + strand at 1985.994 kb on - strand at 1986.061 kb on + strand at 1986.061 kb on + strand, within CCNA_01854 at 1986.083 kb on + strand, within CCNA_01854 at 1986.146 kb on - strand, within CCNA_01854 at 1986.206 kb on + strand, within CCNA_01854 at 1986.223 kb on - strand, within CCNA_01854 at 1986.265 kb on + strand, within CCNA_01854 at 1986.273 kb on - strand, within CCNA_01854 at 1986.277 kb on + strand, within CCNA_01854 at 1986.284 kb on - strand, within CCNA_01854 at 1986.285 kb on - strand, within CCNA_01854 at 1986.363 kb on + strand, within CCNA_01854 at 1986.391 kb on + strand, within CCNA_01854 at 1986.392 kb on + strand, within CCNA_01854 at 1986.415 kb on + strand, within CCNA_01854 at 1986.415 kb on + strand, within CCNA_01854 at 1986.500 kb on + strand, within CCNA_01854 at 1986.518 kb on - strand, within CCNA_01854 at 1986.520 kb on + strand, within CCNA_01854 at 1986.542 kb on + strand, within CCNA_01854 at 1986.567 kb on + strand, within CCNA_01854 at 1986.646 kb on + strand at 1986.646 kb on + strand at 1986.646 kb on + strand at 1986.654 kb on - strand at 1986.654 kb on - strand at 1986.654 kb on - strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.664 kb on - strand at 1986.664 kb on - strand at 1986.664 kb on - strand at 1986.717 kb on + strand at 1986.717 kb on + strand at 1986.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep3 12 days remove 1,984,427 - CCNA_01852 0.32 +1.9 1,984,432 - CCNA_01852 0.33 +1.9 1,984,451 + CCNA_01852 0.34 -1.7 1,984,451 + CCNA_01852 0.34 +1.6 1,984,486 + CCNA_01852 0.37 -0.2 1,984,607 + CCNA_01852 0.46 -0.4 1,984,690 + CCNA_01852 0.52 +1.0 1,984,766 + CCNA_01852 0.58 -0.7 1,984,805 + CCNA_01852 0.61 +1.1 1,984,834 + CCNA_01852 0.63 -0.7 1,984,834 + CCNA_01852 0.63 -2.2 1,984,834 + CCNA_01852 0.63 -2.1 1,984,834 + CCNA_01852 0.63 -0.4 1,984,842 - CCNA_01852 0.63 -0.2 1,984,842 - CCNA_01852 0.63 -0.4 1,984,842 - CCNA_01852 0.63 +0.8 1,984,842 - CCNA_01852 0.63 +0.6 1,984,868 + CCNA_01852 0.65 -0.8 1,984,884 + CCNA_01852 0.67 -0.4 1,984,884 + CCNA_01852 0.67 +0.6 1,984,892 - CCNA_01852 0.67 -0.2 1,984,894 + CCNA_01852 0.67 -0.9 1,984,894 + CCNA_01852 0.67 +0.6 1,984,894 + CCNA_01852 0.67 -0.2 1,984,958 - CCNA_01852 0.72 -0.1 1,984,999 + CCNA_01852 0.75 +0.8 1,985,004 + CCNA_01852 0.75 -0.0 1,985,007 - CCNA_01852 0.76 +1.0 1,985,042 + CCNA_01852 0.78 -1.3 1,985,113 + CCNA_01852 0.84 -0.6 1,985,113 + CCNA_01852 0.84 -2.5 1,985,123 - CCNA_01852 0.84 +0.2 1,985,131 + CCNA_01852 0.85 -2.4 1,985,132 + CCNA_01852 0.85 -1.2 1,985,137 + CCNA_01852 0.85 -0.1 1,985,142 + CCNA_01852 0.86 +0.4 1,985,146 - CCNA_01852 0.86 +0.3 1,985,153 + CCNA_01852 0.87 +0.3 1,985,161 - CCNA_01852 0.87 -0.6 1,985,197 - CCNA_01852 0.90 +2.6 1,985,198 - CCNA_01852 0.90 -1.3 1,985,211 - +1.3 1,985,224 + +0.3 1,985,227 - -1.1 1,985,246 + -1.2 1,985,326 + -1.3 1,985,326 + +2.6 1,985,334 - +0.6 1,985,334 - +1.3 1,985,338 + -0.4 1,985,397 + -0.2 1,985,419 - +0.6 1,985,422 + -1.8 1,985,430 - -0.6 1,985,528 + CCNA_01853 0.25 -2.8 1,985,536 - CCNA_01853 0.27 +1.0 1,985,605 - CCNA_01853 0.44 -0.2 1,985,608 + CCNA_01853 0.45 -2.4 1,985,616 - CCNA_01853 0.47 +1.0 1,985,646 + CCNA_01853 0.55 -1.9 1,985,646 + CCNA_01853 0.55 -0.6 1,985,699 + CCNA_01853 0.68 -0.8 1,985,707 - CCNA_01853 0.70 +0.0 1,985,720 + CCNA_01853 0.73 -2.6 1,985,725 + CCNA_01853 0.74 -1.5 1,985,744 + +0.3 1,985,766 + CCNA_01853 0.84 -1.6 1,985,766 + CCNA_01853 0.84 -1.3 1,985,768 + CCNA_01853 0.85 -1.2 1,985,870 + -0.6 1,985,870 + -1.3 1,985,884 + -1.6 1,985,897 - +1.6 1,985,922 - +2.6 1,985,922 - +1.6 1,985,922 - +0.6 1,985,938 + +0.6 1,985,946 - +2.6 1,985,946 - +2.6 1,985,976 + -0.2 1,985,986 + +0.6 1,985,994 - +0.3 1,986,061 + +0.6 1,986,061 + CCNA_01854 0.13 +0.0 1,986,083 + CCNA_01854 0.16 -0.2 1,986,146 - CCNA_01854 0.26 +1.0 1,986,206 + CCNA_01854 0.35 -2.0 1,986,223 - CCNA_01854 0.37 +2.6 1,986,265 + CCNA_01854 0.44 +0.9 1,986,273 - CCNA_01854 0.45 +1.6 1,986,277 + CCNA_01854 0.45 -0.4 1,986,284 - CCNA_01854 0.47 +0.3 1,986,285 - CCNA_01854 0.47 +1.6 1,986,363 + CCNA_01854 0.58 -1.3 1,986,391 + CCNA_01854 0.63 -0.4 1,986,392 + CCNA_01854 0.63 -1.4 1,986,415 + CCNA_01854 0.66 -1.9 1,986,415 + CCNA_01854 0.66 -1.3 1,986,500 + CCNA_01854 0.79 -1.8 1,986,518 - CCNA_01854 0.82 +1.6 1,986,520 + CCNA_01854 0.82 -2.4 1,986,542 + CCNA_01854 0.85 -1.6 1,986,567 + CCNA_01854 0.89 -2.4 1,986,646 + +0.3 1,986,646 + +0.7 1,986,646 + +0.3 1,986,654 - +1.6 1,986,654 - +2.6 1,986,654 - +0.6 1,986,656 + -0.2 1,986,656 + +0.5 1,986,656 + +0.1 1,986,656 + -0.0 1,986,656 + +0.2 1,986,664 - +0.0 1,986,664 - +1.0 1,986,664 - +1.6 1,986,717 + +0.3 1,986,717 + +0.8 1,986,751 + -0.6
Or see this region's nucleotide sequence