Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01261

Experiment: PYE 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep3 12 days
1,387,019	+		CCNA_01259	0.90	+0.6
1,387,042	+				+0.4
1,387,042	+				+0.4
1,387,065	+				+0.3
1,387,113	-				+0.2
1,387,193	+				-0.7
1,387,211	+				+0.0
1,387,214	-		CCNA_01260	0.10	-3.2
1,387,221	-		CCNA_01260	0.11	-1.9
1,387,321	+		CCNA_01260	0.24	-1.4
1,387,325	+		CCNA_01260	0.25	+0.3
1,387,429	-		CCNA_01260	0.39	-0.0
1,387,431	+		CCNA_01260	0.39	-0.7
1,387,439	-		CCNA_01260	0.40	+0.5
1,387,475	+				+2.5
1,387,475	+		CCNA_01260	0.45	-1.6
1,387,475	+		CCNA_01260	0.45	+1.5
1,387,483	-		CCNA_01260	0.46	+0.5
1,387,483	-		CCNA_01260	0.46	+2.2
1,387,533	+		CCNA_01260	0.53	+0.1
1,387,536	-		CCNA_01260	0.53	+0.3
1,387,546	-		CCNA_01260	0.54	+1.4
1,387,561	+		CCNA_01260	0.56	-1.2
1,387,561	-				-0.1
1,387,609	-		CCNA_01260	0.63	+0.5
1,387,609	-		CCNA_01260	0.63	+0.8
1,387,667	+		CCNA_01260	0.71	-0.8
1,387,673	+		CCNA_01260	0.71	-0.3
1,387,673	+		CCNA_01260	0.71	-0.9
1,387,675	-		CCNA_01260	0.72	-0.5
1,387,705	+		CCNA_01260	0.76	-0.2
1,387,705	+		CCNA_01260	0.76	-0.1
1,387,705	+		CCNA_01260	0.76	+1.1
1,387,710	+		CCNA_01260	0.76	+2.7
1,387,710	+		CCNA_01260	0.76	-0.3
1,387,710	+		CCNA_01260	0.76	-1.0
1,387,710	+		CCNA_01260	0.76	-1.2
1,387,710	+		CCNA_01260	0.76	-1.7
1,387,710	+		CCNA_01260	0.76	-1.0
1,387,710	+		CCNA_01260	0.76	-1.7
1,387,710	+		CCNA_01260	0.76	+0.2
1,387,710	+		CCNA_01260	0.76	-0.1
1,387,718	-		CCNA_01260	0.77	-1.3
1,387,718	-		CCNA_01260	0.77	-1.1
1,387,718	-		CCNA_01260	0.77	-0.9
1,387,718	-		CCNA_01260	0.77	+2.5
1,387,784	+		CCNA_01260	0.86	-0.5
1,387,791	+		CCNA_01260	0.87	-0.7
1,387,792	-		CCNA_01260	0.87	-2.1
1,387,835	-				-0.7
1,387,900	-				-0.4
1,387,908	-				-2.7
1,387,936	+				-0.3
1,387,936	+				-1.2
1,387,936	+				-1.1
1,387,936	+				+1.1
1,387,936	+				-0.2
1,387,936	+				-0.8
1,387,944	-				+0.2
1,387,944	-				-0.1
1,387,944	-				-0.1
1,387,944	-				+2.5
1,387,944	-				+0.2
1,387,944	-				+0.3
1,387,944	-				+2.5
1,387,944	-				+0.5
1,387,944	-				+0.9
1,387,944	-				+0.5
1,387,944	-				-0.1
1,387,944	-				-0.5
1,387,944	-				+0.9
1,387,973	-				-0.8
1,388,029	+				+0.2
1,388,041	+				+1.5
1,388,060	-				+0.7
1,388,060	-				+0.0
1,388,073	+				+1.0
1,388,123	+		CCNA_01261	0.10	+0.1
1,388,133	+		CCNA_01261	0.11	+0.2
1,388,133	+		CCNA_01261	0.11	+0.5
1,388,133	+		CCNA_01261	0.11	+0.1
1,388,133	+		CCNA_01261	0.11	+0.2
1,388,141	-		CCNA_01261	0.12	+0.7
1,388,141	-		CCNA_01261	0.12	+0.9
1,388,141	-		CCNA_01261	0.12	+1.5
1,388,141	-		CCNA_01261	0.12	-0.1
1,388,141	-		CCNA_01261	0.12	+0.4
1,388,184	-		CCNA_01261	0.16	+1.5
1,388,194	+		CCNA_01261	0.17	+0.3
1,388,194	+		CCNA_01261	0.17	+0.4
1,388,202	-		CCNA_01261	0.18	-0.9
1,388,202	-		CCNA_01261	0.18	-1.1
1,388,202	-		CCNA_01261	0.18	+1.8
1,388,217	+		CCNA_01261	0.19	-0.8
1,388,234	+		CCNA_01261	0.20	+0.6
1,388,234	+		CCNA_01261	0.20	+0.5
1,388,240	-		CCNA_01261	0.21	+1.2
1,388,242	+		CCNA_01261	0.21	+0.5
1,388,249	+		CCNA_01261	0.22	+1.1
1,388,250	-		CCNA_01261	0.22	+1.3
1,388,267	+		CCNA_01261	0.23	+0.5
1,388,286	+		CCNA_01261	0.25	-0.1
1,388,286	+		CCNA_01261	0.25	+1.2
1,388,286	+		CCNA_01261	0.25	+0.8
1,388,286	+		CCNA_01261	0.25	+1.1
1,388,294	-		CCNA_01261	0.26	+1.5
1,388,294	-		CCNA_01261	0.26	+0.9
1,388,294	-		CCNA_01261	0.26	+1.2
1,388,321	-		CCNA_01261	0.28	+0.2
1,388,324	+		CCNA_01261	0.28	+0.1
1,388,344	+		CCNA_01261	0.30	-0.8
1,388,349	+		CCNA_01261	0.31	-1.1
1,388,349	+		CCNA_01261	0.31	+0.5
1,388,367	-		CCNA_01261	0.32	+0.2
1,388,396	+		CCNA_01261	0.35	-0.8
1,388,396	+		CCNA_01261	0.35	+2.3
1,388,404	-		CCNA_01261	0.36	-0.2
1,388,404	-		CCNA_01261	0.36	+0.9
1,388,404	-		CCNA_01261	0.36	-0.4
1,388,458	+				-0.8
1,388,462	+		CCNA_01261	0.41	+0.9
1,388,504	+		CCNA_01261	0.45	+1.3
1,388,514	+		CCNA_01261	0.46	+0.2
1,388,522	-		CCNA_01261	0.46	-0.1
1,388,532	-		CCNA_01261	0.47	-1.0
1,388,552	+		CCNA_01261	0.49	-0.6
1,388,557	+		CCNA_01261	0.49	+0.8
1,388,597	+		CCNA_01261	0.53	+1.3
1,388,610	-		CCNA_01261	0.54	+0.9
1,388,642	+		CCNA_01261	0.57	+0.9
1,388,694	-		CCNA_01261	0.62	-1.7
1,388,761	-		CCNA_01261	0.68	+0.4
1,388,809	+		CCNA_01261	0.72	+0.6
1,388,809	+		CCNA_01261	0.72	+0.6
1,388,832	-		CCNA_01261	0.74	+1.3
1,388,854	+		CCNA_01261	0.76	+2.3
1,388,872	+		CCNA_01261	0.78	+0.9
1,388,872	+		CCNA_01261	0.78	-0.1
1,388,880	-		CCNA_01261	0.78	-0.0
1,388,880	-		CCNA_01261	0.78	+0.5
1,388,880	-		CCNA_01261	0.78	+0.3
1,388,887	+		CCNA_01261	0.79	+0.2
1,388,888	+		CCNA_01261	0.79	+0.1
1,388,928	-		CCNA_01261	0.83	-0.4
1,388,960	+		CCNA_01261	0.85	-0.0
1,388,960	+		CCNA_01261	0.85	+1.1
1,388,960	+		CCNA_01261	0.85	+1.2
1,388,960	+		CCNA_01261	0.85	-1.3
1,388,968	-		CCNA_01261	0.86	+0.5
1,388,968	-		CCNA_01261	0.86	-0.2
1,388,968	-		CCNA_01261	0.86	+0.2
1,388,990	+		CCNA_01261	0.88	-0.0
1,388,998	-		CCNA_01261	0.89	+0.3
1,389,032	-				+0.6
1,389,114	-				+0.8
1,389,133	-				+0.9
1,389,151	+				+0.8
1,389,151	+				+2.7
1,389,198	+				+1.3
1,389,198	+				+0.6
1,389,198	-				-0.5
1,389,199	+				-0.4
1,389,207	-				+0.5
1,389,228	+				+1.1
1,389,256	+				-0.2
1,389,354	+				+0.5
1,389,406	-				+0.9
1,389,437	-		CCNA_01262	0.10	-1.0
1,389,501	-		CCNA_01262	0.12	-0.5
1,389,507	+		CCNA_01262	0.12	+0.6
1,389,515	-		CCNA_01262	0.13	+0.7
1,389,556	+		CCNA_01262	0.14	+0.1
1,389,556	+		CCNA_01262	0.14	+0.7
1,389,569	-		CCNA_01262	0.14	+1.5
1,389,631	+		CCNA_01262	0.16	+1.2
1,389,631	+		CCNA_01262	0.16	+0.2
1,389,631	+		CCNA_01262	0.16	-0.7
1,389,636	+		CCNA_01262	0.16	+1.0
1,389,639	-		CCNA_01262	0.16	+0.2
1,389,639	-		CCNA_01262	0.16	-0.6
1,389,652	+		CCNA_01262	0.17	+0.5
1,389,657	+		CCNA_01262	0.17	+0.4
1,389,657	+		CCNA_01262	0.17	-0.6
1,389,665	-		CCNA_01262	0.17	-1.6
1,389,675	-		CCNA_01262	0.18	+1.1
1,389,707	+		CCNA_01262	0.19	+0.0
1,389,715	-		CCNA_01262	0.19	+1.5
1,389,725	-		CCNA_01262	0.19	+0.6
1,389,747	+		CCNA_01262	0.20	+0.2
1,389,756	+		CCNA_01262	0.20	+0.6
1,389,756	-		CCNA_01262	0.20	+2.2
1,389,757	-		CCNA_01262	0.20	-0.1
1,389,784	+		CCNA_01262	0.21	+1.5
1,389,792	-		CCNA_01262	0.21	-0.9
1,389,797	-		CCNA_01262	0.22	+0.9
1,389,824	+		CCNA_01262	0.22	+1.2
1,389,824	+		CCNA_01262	0.22	+0.0
1,389,824	+		CCNA_01262	0.22	+1.6
1,389,826	+				+0.5
1,389,826	+		CCNA_01262	0.22	+1.0
1,389,903	+		CCNA_01262	0.25	+0.7
1,389,914	+		CCNA_01262	0.25	+0.8
1,389,960	+		CCNA_01262	0.27	+0.6
1,389,965	+		CCNA_01262	0.27	+0.0
1,389,970	+		CCNA_01262	0.27	+0.3
1,389,970	+		CCNA_01262	0.27	+1.0
1,389,978	-		CCNA_01262	0.27	-1.5
1,389,998	-		CCNA_01262	0.28	+1.9
1,390,008	+		CCNA_01262	0.28	+0.1
1,390,008	+		CCNA_01262	0.28	+0.9
1,390,008	+				+1.9
1,390,008	+		CCNA_01262	0.28	-0.0
1,390,008	+		CCNA_01262	0.28	+0.6
1,390,008	+		CCNA_01262	0.28	+0.5
1,390,008	+		CCNA_01262	0.28	+1.2
1,390,008	+		CCNA_01262	0.28	+0.0
1,390,008	+		CCNA_01262	0.28	+0.9
1,390,008	+		CCNA_01262	0.28	+1.0
1,390,016	-		CCNA_01262	0.28	-1.3
1,390,016	-		CCNA_01262	0.28	-0.7
1,390,016	-		CCNA_01262	0.28	-0.1
1,390,016	-		CCNA_01262	0.28	-0.5
1,390,036	-		CCNA_01262	0.29	-0.7
1,390,042	+		CCNA_01262	0.29	+0.9
1,390,103	-		CCNA_01262	0.31	+0.9
1,390,119	+		CCNA_01262	0.32	+0.7
1,390,120	+		CCNA_01262	0.32	+0.8