Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01247

Experiment: PYE 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep3 12 days
1,373,364	-				-0.7
1,373,366	-				+0.0
1,373,383	-				-0.1
1,373,386	+				+1.2
1,373,386	+				+0.6
1,373,400	-				-1.3
1,373,408	+				-1.0
1,373,408	+				-0.7
1,373,416	-				-0.4
1,373,460	-				-0.2
1,373,491	+				+1.8
1,373,499	-				-0.1
1,373,519	-		CCNA_01246	0.10	-0.9
1,373,529	+		CCNA_01246	0.11	-0.3
1,373,533	+		CCNA_01246	0.12	-1.0
1,373,584	+		CCNA_01246	0.17	+0.5
1,373,590	+		CCNA_01246	0.18	+1.5
1,373,620	-		CCNA_01246	0.21	-1.0
1,373,622	+		CCNA_01246	0.21	+0.9
1,373,637	+		CCNA_01246	0.23	+0.9
1,373,637	+		CCNA_01246	0.23	+0.5
1,373,640	-		CCNA_01246	0.23	-0.1
1,373,645	-		CCNA_01246	0.24	-0.3
1,373,686	-		CCNA_01246	0.28	+0.6
1,373,711	+		CCNA_01246	0.31	-0.7
1,373,938	+		CCNA_01246	0.56	+1.5
1,373,967	-		CCNA_01246	0.59	-0.3
1,373,984	+		CCNA_01246	0.61	-0.1
1,373,992	-		CCNA_01246	0.62	+0.4
1,373,992	-		CCNA_01246	0.62	+0.3
1,374,030	+		CCNA_01246	0.66	+0.8
1,374,040	+		CCNA_01246	0.67	-1.4
1,374,048	-		CCNA_01246	0.68	+0.7
1,374,048	-		CCNA_01246	0.68	+0.3
1,374,048	-		CCNA_01246	0.68	+1.1
1,374,053	-		CCNA_01246	0.69	+0.7
1,374,103	+		CCNA_01246	0.74	-0.9
1,374,142	-		CCNA_01246	0.78	+1.0
1,374,160	+		CCNA_01246	0.80	+0.9
1,374,165	+		CCNA_01246	0.81	-0.2
1,374,165	+		CCNA_01246	0.81	+0.4
1,374,165	+		CCNA_01246	0.81	+0.2
1,374,165	+		CCNA_01246	0.81	+2.9
1,374,165	+		CCNA_01246	0.81	-0.5
1,374,165	+		CCNA_01246	0.81	-1.4
1,374,173	-		CCNA_01246	0.82	+0.9
1,374,173	-		CCNA_01246	0.82	+0.1
1,374,173	-		CCNA_01246	0.82	+0.1
1,374,173	-		CCNA_01246	0.82	-0.9
1,374,173	-		CCNA_01246	0.82	+0.6
1,374,173	-		CCNA_01246	0.82	+0.4
1,374,194	+		CCNA_01246	0.84	-0.5
1,374,229	-		CCNA_01246	0.88	+0.4
1,374,267	+				-0.1
1,374,275	-				+0.5
1,374,275	-				+0.7
1,374,275	-				+0.6
1,374,298	-				+0.5
1,374,324	+				+0.6
1,374,351	-				-1.2
1,374,359	+				+0.5
1,374,378	-				-0.5
1,374,392	+				+0.4
1,374,399	+				+0.5
1,374,401	-				+1.5
1,374,401	-				+0.1
1,374,423	+				-1.2
1,374,463	+				-1.7
1,374,471	-				+0.4
1,374,488	+				+0.2
1,374,495	-				-0.7
1,374,503	-		CCNA_01247	0.10	-0.2
1,374,574	-		CCNA_01247	0.15	+0.4
1,374,574	-		CCNA_01247	0.15	-0.8
1,374,579	-		CCNA_01247	0.16	+0.7
1,374,579	-		CCNA_01247	0.16	-0.6
1,374,645	+		CCNA_01247	0.20	+0.4
1,374,655	-		CCNA_01247	0.21	-1.2
1,374,657	-				+0.7
1,374,691	+		CCNA_01247	0.23	-0.1
1,374,693	+		CCNA_01247	0.23	+1.5
1,374,697	+		CCNA_01247	0.24	+0.7
1,374,697	+		CCNA_01247	0.24	-0.3
1,374,698	+		CCNA_01247	0.24	-0.7
1,374,698	+		CCNA_01247	0.24	+2.5
1,374,700	-		CCNA_01247	0.24	+1.2
1,374,701	-		CCNA_01247	0.24	-0.8
1,374,705	-		CCNA_01247	0.24	-0.9
1,374,716	+		CCNA_01247	0.25	+1.9
1,374,721	+		CCNA_01247	0.25	-0.9
1,374,730	+		CCNA_01247	0.26	-1.2
1,374,730	+				+1.9
1,374,738	-		CCNA_01247	0.27	-1.3
1,374,738	-		CCNA_01247	0.27	-0.5
1,374,764	+		CCNA_01247	0.28	+0.9
1,374,772	+		CCNA_01247	0.29	+0.9
1,374,779	-		CCNA_01247	0.29	+1.5
1,374,822	-		CCNA_01247	0.32	-0.5
1,374,845	+		CCNA_01247	0.34	+2.5
1,374,899	-		CCNA_01247	0.38	-0.8
1,374,948	+		CCNA_01247	0.41	+0.5
1,374,998	+		CCNA_01247	0.45	+0.9
1,375,006	-		CCNA_01247	0.45	+0.2
1,375,040	-		CCNA_01247	0.48	+0.3
1,375,081	+		CCNA_01247	0.50	-0.1
1,375,109	+		CCNA_01247	0.52	-1.3
1,375,133	+		CCNA_01247	0.54	-0.4
1,375,159	+		CCNA_01247	0.56	-0.1
1,375,159	+		CCNA_01247	0.56	-1.0
1,375,175	+		CCNA_01247	0.57	-0.3
1,375,193	-		CCNA_01247	0.58	-0.6
1,375,215	+		CCNA_01247	0.60	+0.5
1,375,222	+		CCNA_01247	0.60	-0.1
1,375,242	+		CCNA_01247	0.62	-0.4
1,375,262	+		CCNA_01247	0.63	-0.2
1,375,290	-		CCNA_01247	0.65	+0.2
1,375,405	+		CCNA_01247	0.73	+0.8
1,375,424	-		CCNA_01247	0.74	-0.2
1,375,428	+		CCNA_01247	0.75	+0.2
1,375,428	+		CCNA_01247	0.75	-0.5
1,375,436	-		CCNA_01247	0.75	-0.8
1,375,438	-		CCNA_01247	0.75	-0.1
1,375,438	-		CCNA_01247	0.75	-0.6
1,375,438	-		CCNA_01247	0.75	-1.1
1,375,455	-		CCNA_01247	0.76	+0.4
1,375,457	-		CCNA_01247	0.77	+0.2
1,375,472	+		CCNA_01247	0.78	+2.5
1,375,511	-		CCNA_01247	0.80	-0.2
1,375,529	-		CCNA_01247	0.82	-0.6
1,375,551	+		CCNA_01247	0.83	+0.5
1,375,564	-		CCNA_01247	0.84	-0.3
1,375,569	-		CCNA_01247	0.84	+0.5
1,375,581	-		CCNA_01247	0.85	-0.4
1,375,597	+		CCNA_01247	0.86	-0.7
1,375,605	-		CCNA_01247	0.87	-1.6
1,375,644	+		CCNA_01247	0.90	-0.5
1,375,644	+		CCNA_01247	0.90	+0.5
1,375,644	+		CCNA_01247	0.90	-0.3
1,375,644	+		CCNA_01247	0.90	+0.0
1,375,652	-				-1.0
1,375,652	-				-0.5
1,375,652	-				+0.1
1,375,652	-				+0.5
1,375,734	-				+0.4
1,375,735	+				+0.4
1,375,735	+				-2.1
1,375,735	+				-0.5
1,375,740	+				-0.1
1,375,740	+				+0.0
1,375,798	+				+2.5
1,375,806	-				-0.4
1,375,815	+				+1.9
1,375,927	+				+2.5
1,375,935	-				+0.5
1,375,935	-				-0.4
1,375,936	+				+0.2
1,375,962	+				-0.0
1,375,991	-				+0.9
1,376,016	+				+0.5
1,376,016	+				-0.9
1,376,034	+				-0.0
1,376,034	+				-0.7
1,376,042	-				+2.5
1,376,103	+		CCNA_01248	0.17	+0.8
1,376,103	+		CCNA_01248	0.17	+0.5
1,376,104	+		CCNA_01248	0.17	-0.0
1,376,141	+		CCNA_01248	0.23	-0.3
1,376,149	-		CCNA_01248	0.25	+1.5
1,376,151	+		CCNA_01248	0.25	-0.7
1,376,151	+		CCNA_01248	0.25	-0.1
1,376,151	-		CCNA_01248	0.25	-0.3
1,376,159	-		CCNA_01248	0.26	+1.1
1,376,159	-		CCNA_01248	0.26	+0.9
1,376,159	-		CCNA_01248	0.26	+0.2
1,376,159	-		CCNA_01248	0.26	-0.3
1,376,175	-		CCNA_01248	0.29	+3.5
1,376,188	+		CCNA_01248	0.31	-0.8
1,376,188	+		CCNA_01248	0.31	-0.4
1,376,236	+		CCNA_01248	0.38	+0.1
1,376,239	-		CCNA_01248	0.39	-0.7
1,376,287	+		CCNA_01248	0.46	+0.1
1,376,302	+		CCNA_01248	0.49	+0.2
1,376,302	+		CCNA_01248	0.49	+0.3
1,376,310	-		CCNA_01248	0.50	+0.5
1,376,328	+		CCNA_01248	0.53	+0.9
1,376,328	+		CCNA_01248	0.53	+0.1
1,376,328	+		CCNA_01248	0.53	+0.7
1,376,328	+		CCNA_01248	0.53	+0.2
1,376,328	+		CCNA_01248	0.53	+0.5
1,376,328	+		CCNA_01248	0.53	+0.5
1,376,336	-		CCNA_01248	0.54	+0.5
1,376,336	-		CCNA_01248	0.54	+0.2
1,376,336	-		CCNA_01248	0.54	-0.3
1,376,344	+		CCNA_01248	0.55	-0.1
1,376,352	+		CCNA_01248	0.56	+0.4
1,376,357	+		CCNA_01248	0.57	-0.1
1,376,360	-		CCNA_01248	0.58	+2.5
1,376,370	+		CCNA_01248	0.59	-0.8
1,376,378	-		CCNA_01248	0.61	+0.5
1,376,396	+		CCNA_01248	0.63	-1.2
1,376,455	+		CCNA_01248	0.73	+0.4
1,376,590	+				+0.6
1,376,593	-				+1.5
1,376,617	+				-0.4
1,376,620	-				+0.5
1,376,623	+				-0.1
1,376,692	+				-2.9
1,376,710	+				-1.3
1,376,725	+		CCNA_01249	0.11	+0.9
1,376,733	-		CCNA_01249	0.12	+0.2
1,376,744	+		CCNA_01249	0.14	-1.7
1,376,751	+		CCNA_01249	0.15	-0.8
1,376,751	+		CCNA_01249	0.15	-1.2
1,376,751	+		CCNA_01249	0.15	-2.3
1,376,752	-		CCNA_01249	0.15	+1.5
1,376,752	-		CCNA_01249	0.15	-0.5
1,376,767	+		CCNA_01249	0.17	-2.0
1,376,788	+		CCNA_01249	0.19	-2.8