Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01044

Experiment: PYE 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep3 12 days
1,139,161	-		CCNA_01042	0.76	-1.9
1,139,227	+		CCNA_01042	0.79	-0.4
1,139,227	+		CCNA_01042	0.79	-1.4
1,139,235	-		CCNA_01042	0.79	-2.6
1,139,235	-		CCNA_01042	0.79	-2.5
1,139,351	+		CCNA_01042	0.83	-1.7
1,139,354	-		CCNA_01042	0.84	+1.4
1,139,359	-		CCNA_01042	0.84	+0.8
1,139,362	-		CCNA_01042	0.84	-2.2
1,139,368	+		CCNA_01042	0.84	-2.7
1,139,376	-		CCNA_01042	0.84	-1.6
1,139,382	+		CCNA_01042	0.85	+1.2
1,139,382	+		CCNA_01042	0.85	-2.0
1,139,390	-		CCNA_01042	0.85	-2.1
1,139,390	-		CCNA_01042	0.85	-3.8
1,139,390	-		CCNA_01042	0.85	-1.5
1,139,450	-		CCNA_01042	0.87	-1.3
1,139,493	+		CCNA_01042	0.89	-0.4
1,139,506	+		CCNA_01042	0.90	-0.4
1,139,506	+		CCNA_01042	0.90	-0.4
1,139,521	+				+0.8
1,139,539	+				-1.3
1,139,627	-				-0.8
1,139,641	-				-2.1
1,139,671	+				-2.9
1,139,673	+				-1.6
1,139,679	-				-1.3
1,139,680	+				+0.8
1,139,681	-				-1.4
1,139,688	-				+1.3
1,139,690	+				-0.3
1,139,692	+				-0.6
1,139,694	-				-1.7
1,139,696	+				-0.6
1,139,696	+				-0.4
1,139,696	+				-0.9
1,139,704	-				-0.8
1,139,707	+				-0.5
1,139,738	+				-1.8
1,139,750	-				-1.0
1,139,864	-		CCNA_01043	0.56	-0.3
1,139,880	-		CCNA_01043	0.65	-1.3
1,139,880	-		CCNA_01043	0.65	-1.5
1,139,894	+		CCNA_01043	0.73	+0.1
1,139,915	-		CCNA_01043	0.84	-3.4
1,140,012	-				+0.1
1,140,078	+				-0.5
1,140,126	+				+0.7
1,140,148	+				-0.9
1,140,149	-				+3.4
1,140,162	+				+1.1
1,140,169	-				-0.2
1,140,170	-				-1.8
1,140,190	-		CCNA_01044	0.10	+0.8
1,140,218	-		CCNA_01044	0.15	+0.4
1,140,231	-		CCNA_01044	0.17	+1.4
1,140,240	+		CCNA_01044	0.18	-0.5
1,140,271	-		CCNA_01044	0.23	+0.4
1,140,317	-		CCNA_01044	0.30	+0.8
1,140,339	+		CCNA_01044	0.34	+1.2
1,140,339	+		CCNA_01044	0.34	+0.5
1,140,339	+		CCNA_01044	0.34	+0.2
1,140,339	+		CCNA_01044	0.34	+1.4
1,140,339	+		CCNA_01044	0.34	+1.3
1,140,339	+		CCNA_01044	0.34	-0.8
1,140,339	+		CCNA_01044	0.34	+1.2
1,140,339	+		CCNA_01044	0.34	+1.4
1,140,347	-		CCNA_01044	0.35	+1.4
1,140,347	-		CCNA_01044	0.35	+0.8
1,140,362	-		CCNA_01044	0.38	-1.1
1,140,405	+		CCNA_01044	0.44	+1.0
1,140,405	+		CCNA_01044	0.44	+1.4
1,140,410	+		CCNA_01044	0.45	+1.0
1,140,410	+		CCNA_01044	0.45	+0.8
1,140,410	+		CCNA_01044	0.45	-0.0
1,140,415	+		CCNA_01044	0.46	+2.1
1,140,415	+		CCNA_01044	0.46	+0.2
1,140,423	-		CCNA_01044	0.47	+1.4
1,140,428	-		CCNA_01044	0.48	+0.9
1,140,446	+		CCNA_01044	0.51	+0.4
1,140,448	+		CCNA_01044	0.51	+1.0
1,140,471	-		CCNA_01044	0.55	+1.7
1,140,471	-		CCNA_01044	0.55	+1.4
1,140,514	+		CCNA_01044	0.62	+0.4
1,140,534	+		CCNA_01044	0.65	+1.2
1,140,534	+		CCNA_01044	0.65	+1.1
1,140,534	+		CCNA_01044	0.65	+1.9
1,140,534	+		CCNA_01044	0.65	+1.9
1,140,534	+		CCNA_01044	0.65	+1.7
1,140,534	+		CCNA_01044	0.65	+1.6
1,140,534	+		CCNA_01044	0.65	+1.2
1,140,534	+		CCNA_01044	0.65	+1.9
1,140,542	-		CCNA_01044	0.66	+1.4
1,140,542	-		CCNA_01044	0.66	+0.4
1,140,542	-		CCNA_01044	0.66	-1.3
1,140,549	-		CCNA_01044	0.67	-0.8
1,140,582	+		CCNA_01044	0.72	+1.4
1,140,590	-		CCNA_01044	0.74	+1.0
1,140,590	-		CCNA_01044	0.74	+0.5
1,140,590	-		CCNA_01044	0.74	+0.1
1,140,590	-		CCNA_01044	0.74	+1.4
1,140,597	-		CCNA_01044	0.75	+1.1
1,140,633	+		CCNA_01044	0.80	+0.6
1,140,680	+		CCNA_01044	0.88	+1.7
1,140,680	+		CCNA_01044	0.88	+0.5
1,140,714	+				+0.9
1,140,741	+				+0.1
1,140,749	-				+0.1
1,140,750	-				+1.4
1,140,776	-				+0.1
1,140,787	+		CCNA_01045	0.11	-0.1
1,140,787	+		CCNA_01045	0.11	-0.6
1,140,865	+		CCNA_01045	0.34	-0.8
1,140,900	+		CCNA_01045	0.44	+1.4
1,140,900	+		CCNA_01045	0.44	-1.1
1,140,900	+		CCNA_01045	0.44	-0.1
1,140,900	+		CCNA_01045	0.44	+0.1
1,140,903	-		CCNA_01045	0.45	-0.1
1,140,908	-		CCNA_01045	0.46	+0.0
1,140,908	-		CCNA_01045	0.46	-0.4
1,140,908	-		CCNA_01045	0.46	-1.0
1,140,936	-		CCNA_01045	0.54	-0.2
1,140,936	-		CCNA_01045	0.54	-0.8
1,140,956	-		CCNA_01045	0.60	-0.2
1,140,973	-		CCNA_01045	0.65	-0.0
1,141,006	+		CCNA_01045	0.74	-1.1
1,141,014	-		CCNA_01045	0.77	+1.1
1,141,027	-		CCNA_01045	0.81	-0.9
1,141,052	+		CCNA_01045	0.88	-1.8
1,141,065	-				+0.5
1,141,066	-				-0.1
1,141,086	+				+0.7
1,141,089	-				-0.1
1,141,094	-				+0.1
1,141,096	+				-0.4
1,141,123	+				-1.7
1,141,131	-				-1.0
1,141,191	-		CCNA_01046	0.15	+0.4
1,141,191	-		CCNA_01046	0.15	+0.2
1,141,199	+		CCNA_01046	0.16	+0.4
1,141,209	-		CCNA_01046	0.18	+0.3
1,141,264	-		CCNA_01046	0.26	-0.1
1,141,277	+		CCNA_01046	0.28	-0.5
1,141,285	-		CCNA_01046	0.29	+0.9
1,141,285	-		CCNA_01046	0.29	-0.6
1,141,285	-		CCNA_01046	0.29	-0.2
1,141,285	-		CCNA_01046	0.29	-0.2
1,141,354	-		CCNA_01046	0.40	-0.2
1,141,372	-		CCNA_01046	0.43	+0.1
1,141,380	+		CCNA_01046	0.44	+0.2
1,141,388	-		CCNA_01046	0.45	+0.1
1,141,388	-		CCNA_01046	0.45	-0.7
1,141,400	+		CCNA_01046	0.47	-1.9
1,141,420	+		CCNA_01046	0.50	-0.4
1,141,421	-		CCNA_01046	0.50	-0.3
1,141,421	-		CCNA_01046	0.50	-0.1
1,141,428	-		CCNA_01046	0.51	-0.1
1,141,428	-		CCNA_01046	0.51	+0.7
1,141,441	-		CCNA_01046	0.53	-0.3
1,141,454	+		CCNA_01046	0.55	-0.2
1,141,462	-		CCNA_01046	0.56	+1.0
1,141,462	-		CCNA_01046	0.56	+0.2
1,141,467	-		CCNA_01046	0.57	-0.4
1,141,478	+		CCNA_01046	0.59	-0.1
1,141,478	+		CCNA_01046	0.59	+1.2
1,141,478	+		CCNA_01046	0.59	-1.1
1,141,486	-		CCNA_01046	0.60	-0.3
1,141,486	-		CCNA_01046	0.60	+0.5
1,141,493	-		CCNA_01046	0.61	-0.5
1,141,508	-		CCNA_01046	0.63	-0.7
1,141,508	-		CCNA_01046	0.63	-0.2
1,141,556	+		CCNA_01046	0.71	-0.0
1,141,577	+		CCNA_01046	0.74	-0.4
1,141,578	-		CCNA_01046	0.74	-0.3
1,141,585	-		CCNA_01046	0.75	+1.4
1,141,609	+		CCNA_01046	0.79	-1.1
1,141,617	+		CCNA_01046	0.80	-1.9
1,141,638	+		CCNA_01046	0.83	-0.9
1,141,638	+		CCNA_01046	0.83	-0.8
1,141,646	-		CCNA_01046	0.85	-0.8
1,141,659	-				-0.1
1,141,660	+		CCNA_01046	0.87	+0.3
1,141,668	-		CCNA_01046	0.88	-1.1
1,141,668	-		CCNA_01046	0.88	-1.3
1,141,693	+				-1.9
1,141,693	+				-0.8
1,141,701	-				-1.4
1,141,701	-				-0.7
1,141,701	-				+0.3
1,141,701	-				-2.0
1,141,720	+				-1.2
1,141,727	+				+1.4
1,141,735	-				-0.3