Experiment: PYE 30C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00901 and CCNA_00902 are separated by 328 nucleotides CCNA_00902 and CCNA_00903 are separated by 22 nucleotides
CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606
_00901
CCNA_00902: CCNA_00902 - inositol ABC transporter, periplasmic inositol-binding protein IbpA, at 981,935 to 982,915
_00902
CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485
_00903
Position (kb)
981
982
983 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 981.018 kb on + strand, within CCNA_00901 at 981.024 kb on + strand, within CCNA_00901 at 981.048 kb on + strand, within CCNA_00901 at 981.056 kb on - strand, within CCNA_00901 at 981.093 kb on - strand, within CCNA_00901 at 981.102 kb on + strand, within CCNA_00901 at 981.118 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.154 kb on + strand, within CCNA_00901 at 981.155 kb on + strand, within CCNA_00901 at 981.163 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.228 kb on - strand, within CCNA_00901 at 981.317 kb on + strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.382 kb on - strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.404 kb on - strand, within CCNA_00901 at 981.406 kb on + strand, within CCNA_00901 at 981.407 kb on - strand, within CCNA_00901 at 981.409 kb on - strand, within CCNA_00901 at 981.457 kb on - strand, within CCNA_00901 at 981.488 kb on - strand, within CCNA_00901 at 981.495 kb on + strand, within CCNA_00901 at 981.532 kb on + strand at 981.540 kb on - strand at 981.540 kb on - strand at 981.563 kb on - strand at 981.593 kb on - strand at 981.613 kb on + strand at 981.642 kb on - strand at 981.642 kb on - strand at 981.642 kb on - strand at 981.642 kb on - strand at 981.655 kb on - strand at 981.665 kb on - strand at 981.701 kb on + strand at 981.730 kb on + strand at 981.742 kb on + strand at 981.742 kb on + strand at 981.742 kb on + strand at 981.747 kb on + strand at 981.747 kb on + strand at 981.750 kb on - strand at 981.750 kb on - strand at 981.755 kb on - strand at 981.770 kb on + strand at 981.778 kb on + strand at 981.879 kb on + strand at 981.906 kb on - strand at 981.932 kb on + strand at 981.933 kb on - strand at 981.940 kb on - strand at 981.969 kb on - strand at 981.970 kb on + strand at 981.997 kb on - strand at 982.012 kb on - strand at 982.034 kb on - strand, within CCNA_00902 at 982.045 kb on + strand, within CCNA_00902 at 982.052 kb on + strand, within CCNA_00902 at 982.074 kb on + strand, within CCNA_00902 at 982.076 kb on + strand, within CCNA_00902 at 982.122 kb on - strand, within CCNA_00902 at 982.137 kb on - strand, within CCNA_00902 at 982.155 kb on - strand, within CCNA_00902 at 982.157 kb on + strand, within CCNA_00902 at 982.162 kb on + strand, within CCNA_00902 at 982.170 kb on + strand, within CCNA_00902 at 982.190 kb on - strand, within CCNA_00902 at 982.200 kb on + strand, within CCNA_00902 at 982.200 kb on + strand, within CCNA_00902 at 982.205 kb on + strand, within CCNA_00902 at 982.205 kb on + strand, within CCNA_00902 at 982.205 kb on + strand, within CCNA_00902 at 982.213 kb on + strand, within CCNA_00902 at 982.213 kb on + strand, within CCNA_00902 at 982.213 kb on - strand, within CCNA_00902 at 982.221 kb on - strand, within CCNA_00902 at 982.250 kb on + strand, within CCNA_00902 at 982.273 kb on - strand, within CCNA_00902 at 982.292 kb on + strand, within CCNA_00902 at 982.383 kb on - strand, within CCNA_00902 at 982.394 kb on + strand, within CCNA_00902 at 982.422 kb on + strand at 982.449 kb on + strand, within CCNA_00902 at 982.449 kb on + strand, within CCNA_00902 at 982.468 kb on + strand, within CCNA_00902 at 982.468 kb on + strand, within CCNA_00902 at 982.476 kb on - strand, within CCNA_00902 at 982.476 kb on - strand, within CCNA_00902 at 982.486 kb on - strand, within CCNA_00902 at 982.540 kb on + strand, within CCNA_00902 at 982.548 kb on - strand, within CCNA_00902 at 982.548 kb on - strand, within CCNA_00902 at 982.556 kb on + strand, within CCNA_00902 at 982.585 kb on - strand, within CCNA_00902 at 982.622 kb on - strand, within CCNA_00902 at 982.637 kb on + strand, within CCNA_00902 at 982.644 kb on - strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.670 kb on + strand, within CCNA_00902 at 982.678 kb on - strand, within CCNA_00902 at 982.678 kb on - strand, within CCNA_00902 at 982.680 kb on + strand, within CCNA_00902 at 982.687 kb on + strand, within CCNA_00902 at 982.695 kb on - strand, within CCNA_00902 at 982.695 kb on - strand, within CCNA_00902 at 982.701 kb on + strand, within CCNA_00902 at 982.721 kb on + strand, within CCNA_00902 at 982.721 kb on - strand, within CCNA_00902 at 982.723 kb on - strand, within CCNA_00902 at 982.760 kb on + strand, within CCNA_00902 at 982.766 kb on - strand, within CCNA_00902 at 982.768 kb on - strand, within CCNA_00902 at 982.768 kb on - strand, within CCNA_00902 at 982.771 kb on - strand, within CCNA_00902 at 982.815 kb on + strand, within CCNA_00902 at 982.816 kb on + strand, within CCNA_00902 at 982.822 kb on + strand at 982.824 kb on - strand at 982.828 kb on - strand at 982.848 kb on + strand at 982.848 kb on + strand at 982.848 kb on + strand at 982.854 kb on + strand at 982.856 kb on - strand at 982.867 kb on - strand at 982.873 kb on + strand at 982.890 kb on - strand at 982.934 kb on + strand at 982.935 kb on + strand at 982.943 kb on - strand at 983.008 kb on - strand at 983.017 kb on + strand at 983.022 kb on + strand at 983.062 kb on + strand at 983.070 kb on - strand at 983.072 kb on + strand at 983.077 kb on + strand at 983.080 kb on - strand at 983.105 kb on + strand, within CCNA_00903 at 983.112 kb on + strand, within CCNA_00903 at 983.113 kb on - strand, within CCNA_00903 at 983.120 kb on - strand, within CCNA_00903 at 983.132 kb on + strand, within CCNA_00903 at 983.140 kb on - strand, within CCNA_00903 at 983.140 kb on - strand, within CCNA_00903 at 983.143 kb on + strand, within CCNA_00903 at 983.209 kb on + strand, within CCNA_00903 at 983.231 kb on + strand at 983.268 kb on - strand, within CCNA_00903 at 983.268 kb on - strand, within CCNA_00903 at 983.268 kb on - strand, within CCNA_00903 at 983.268 kb on - strand, within CCNA_00903 at 983.297 kb on + strand, within CCNA_00903 at 983.298 kb on + strand, within CCNA_00903 at 983.298 kb on + strand, within CCNA_00903 at 983.305 kb on - strand, within CCNA_00903 at 983.325 kb on - strand, within CCNA_00903 at 983.343 kb on - strand at 983.375 kb on + strand, within CCNA_00903 at 983.396 kb on + strand, within CCNA_00903 at 983.404 kb on - strand, within CCNA_00903 at 983.404 kb on - strand, within CCNA_00903 at 983.404 kb on - strand, within CCNA_00903 at 983.516 kb on + strand, within CCNA_00903 at 983.523 kb on + strand, within CCNA_00903 at 983.524 kb on - strand, within CCNA_00903 at 983.524 kb on - strand, within CCNA_00903 at 983.557 kb on - strand, within CCNA_00903 at 983.579 kb on - strand, within CCNA_00903 at 983.672 kb on + strand, within CCNA_00903 at 983.815 kb on - strand, within CCNA_00903 at 983.830 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.882 kb on + strand, within CCNA_00903
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep3 12 days remove 980,971 + CCNA_00901 0.24 +0.1 980,971 + CCNA_00901 0.24 +0.1 980,971 + CCNA_00901 0.24 +0.4 980,979 - CCNA_00901 0.25 -0.1 980,979 - CCNA_00901 0.25 -0.9 980,979 - CCNA_00901 0.25 +0.3 980,979 - CCNA_00901 0.25 -0.0 981,018 + CCNA_00901 0.30 -0.2 981,024 + CCNA_00901 0.30 +2.4 981,048 + CCNA_00901 0.33 +0.7 981,056 - CCNA_00901 0.34 +0.1 981,093 - CCNA_00901 0.39 -0.0 981,102 + CCNA_00901 0.40 +1.0 981,118 + CCNA_00901 0.42 +0.6 981,128 + CCNA_00901 0.43 -0.1 981,128 + CCNA_00901 0.43 -0.3 981,128 + CCNA_00901 0.43 -0.9 981,136 - CCNA_00901 0.44 +0.8 981,136 - CCNA_00901 0.44 -0.8 981,154 + CCNA_00901 0.46 -0.2 981,155 + CCNA_00901 0.46 -0.4 981,163 - CCNA_00901 0.47 +0.6 981,200 - CCNA_00901 0.51 -1.1 981,200 - CCNA_00901 0.51 -0.1 981,223 - CCNA_00901 0.54 -0.6 981,223 - CCNA_00901 0.54 -1.4 981,223 - CCNA_00901 0.54 +0.8 981,228 - CCNA_00901 0.55 -0.5 981,317 + CCNA_00901 0.65 -0.1 981,325 - CCNA_00901 0.66 +1.4 981,325 - CCNA_00901 0.66 +0.2 981,382 - CCNA_00901 0.73 -1.0 981,386 + CCNA_00901 0.74 -1.4 981,386 + CCNA_00901 0.74 -0.7 981,401 + CCNA_00901 0.75 -1.2 981,401 + CCNA_00901 0.75 -0.6 981,401 + CCNA_00901 0.75 +1.6 981,404 - CCNA_00901 0.76 -0.6 981,406 + CCNA_00901 0.76 +1.1 981,407 - CCNA_00901 0.76 +2.1 981,409 - CCNA_00901 0.76 +0.5 981,457 - CCNA_00901 0.82 -0.5 981,488 - CCNA_00901 0.86 +0.1 981,495 + CCNA_00901 0.87 +0.2 981,532 + +0.1 981,540 - +0.4 981,540 - +0.0 981,563 - +0.6 981,593 - -0.6 981,613 + -0.9 981,642 - +0.2 981,642 - -0.4 981,642 - +0.1 981,642 - +0.3 981,655 - -0.7 981,665 - +1.1 981,701 + +2.4 981,730 + +0.1 981,742 + +0.4 981,742 + +2.4 981,742 + +0.8 981,747 + +0.4 981,747 + +1.1 981,750 - -1.3 981,750 - -0.7 981,755 - -0.7 981,770 + +0.4 981,778 + +1.8 981,879 + +0.7 981,906 - +0.0 981,932 + +0.1 981,933 - +0.3 981,940 - -0.3 981,969 - +0.2 981,970 + +0.2 981,997 - +0.4 982,012 - +0.3 982,034 - CCNA_00902 0.10 -0.4 982,045 + CCNA_00902 0.11 +0.0 982,052 + CCNA_00902 0.12 +0.6 982,074 + CCNA_00902 0.14 -1.0 982,076 + CCNA_00902 0.14 -0.3 982,122 - CCNA_00902 0.19 -0.9 982,137 - CCNA_00902 0.21 -0.3 982,155 - CCNA_00902 0.22 -2.1 982,157 + CCNA_00902 0.23 +0.2 982,162 + CCNA_00902 0.23 -0.0 982,170 + CCNA_00902 0.24 +0.7 982,190 - CCNA_00902 0.26 -1.1 982,200 + CCNA_00902 0.27 +0.5 982,200 + CCNA_00902 0.27 -0.1 982,205 + CCNA_00902 0.28 -0.9 982,205 + CCNA_00902 0.28 +0.3 982,205 + CCNA_00902 0.28 -0.0 982,213 + CCNA_00902 0.28 -0.7 982,213 + CCNA_00902 0.28 +0.3 982,213 - CCNA_00902 0.28 +1.9 982,221 - CCNA_00902 0.29 -2.3 982,250 + CCNA_00902 0.32 +0.1 982,273 - CCNA_00902 0.34 -1.2 982,292 + CCNA_00902 0.36 -0.3 982,383 - CCNA_00902 0.46 +0.1 982,394 + CCNA_00902 0.47 -1.5 982,422 + +0.8 982,449 + CCNA_00902 0.52 -0.2 982,449 + CCNA_00902 0.52 -0.6 982,468 + CCNA_00902 0.54 -0.1 982,468 + CCNA_00902 0.54 -0.3 982,476 - CCNA_00902 0.55 -0.2 982,476 - CCNA_00902 0.55 -0.4 982,486 - CCNA_00902 0.56 -0.5 982,540 + CCNA_00902 0.62 -0.5 982,548 - CCNA_00902 0.62 -0.9 982,548 - CCNA_00902 0.62 -1.2 982,556 + CCNA_00902 0.63 -1.3 982,585 - CCNA_00902 0.66 -1.7 982,622 - CCNA_00902 0.70 -1.3 982,637 + CCNA_00902 0.72 -1.0 982,644 - CCNA_00902 0.72 -1.3 982,670 + CCNA_00902 0.75 -2.1 982,670 + CCNA_00902 0.75 -0.1 982,670 + CCNA_00902 0.75 +1.4 982,670 + CCNA_00902 0.75 +1.2 982,670 + CCNA_00902 0.75 -0.5 982,678 - CCNA_00902 0.76 -0.2 982,678 - CCNA_00902 0.76 -0.8 982,680 + CCNA_00902 0.76 +0.6 982,687 + CCNA_00902 0.77 -0.4 982,695 - CCNA_00902 0.77 +1.7 982,695 - CCNA_00902 0.77 -1.5 982,701 + CCNA_00902 0.78 +1.2 982,721 + CCNA_00902 0.80 -1.4 982,721 - CCNA_00902 0.80 +0.4 982,723 - CCNA_00902 0.80 -0.3 982,760 + CCNA_00902 0.84 +0.7 982,766 - CCNA_00902 0.85 -2.6 982,768 - CCNA_00902 0.85 -0.6 982,768 - CCNA_00902 0.85 -2.4 982,771 - CCNA_00902 0.85 -1.0 982,815 + CCNA_00902 0.90 -0.3 982,816 + CCNA_00902 0.90 +0.6 982,822 + -0.7 982,824 - +0.8 982,828 - +0.1 982,848 + -1.0 982,848 + -0.3 982,848 + +1.2 982,854 + +1.3 982,856 - -0.1 982,867 - -0.3 982,873 + +0.8 982,890 - -2.1 982,934 + +0.8 982,935 + +0.2 982,943 - -1.2 983,008 - -1.4 983,017 + +0.4 983,022 + -1.4 983,062 + +0.6 983,070 - +0.0 983,072 + -1.6 983,077 + -1.2 983,080 - -1.2 983,105 + CCNA_00903 0.11 -0.8 983,112 + CCNA_00903 0.11 -1.5 983,113 - CCNA_00903 0.11 -0.4 983,120 - CCNA_00903 0.12 -0.2 983,132 + CCNA_00903 0.13 -0.8 983,140 - CCNA_00903 0.13 +0.4 983,140 - CCNA_00903 0.13 -0.0 983,143 + CCNA_00903 0.13 -0.2 983,209 + CCNA_00903 0.18 +0.4 983,231 + +3.0 983,268 - CCNA_00903 0.21 -0.9 983,268 - CCNA_00903 0.21 -0.8 983,268 - CCNA_00903 0.21 -0.9 983,268 - CCNA_00903 0.21 -0.8 983,297 + CCNA_00903 0.23 -0.9 983,298 + CCNA_00903 0.23 +0.4 983,298 + CCNA_00903 0.23 +0.7 983,305 - CCNA_00903 0.24 -0.1 983,325 - CCNA_00903 0.25 +0.4 983,343 - -0.2 983,375 + CCNA_00903 0.28 -0.3 983,396 + CCNA_00903 0.30 +0.5 983,404 - CCNA_00903 0.30 -1.2 983,404 - CCNA_00903 0.30 -1.2 983,404 - CCNA_00903 0.30 -0.8 983,516 + CCNA_00903 0.37 -1.1 983,523 + CCNA_00903 0.38 -0.1 983,524 - CCNA_00903 0.38 -1.1 983,524 - CCNA_00903 0.38 +0.1 983,557 - CCNA_00903 0.40 -0.7 983,579 - CCNA_00903 0.41 -1.0 983,672 + CCNA_00903 0.47 -1.5 983,815 - CCNA_00903 0.57 -0.5 983,830 + CCNA_00903 0.58 +0.8 983,835 + CCNA_00903 0.58 -0.9 983,835 + CCNA_00903 0.58 -1.3 983,835 + CCNA_00903 0.58 +0.8 983,835 + CCNA_00903 0.58 +1.4 983,843 - CCNA_00903 0.58 -1.5 983,843 - CCNA_00903 0.58 -0.6 983,843 - CCNA_00903 0.58 +0.1 983,843 - CCNA_00903 0.58 +0.4 983,843 - CCNA_00903 0.58 -0.8 983,843 - CCNA_00903 0.58 -1.1 983,843 - CCNA_00903 0.58 +1.1 983,882 + CCNA_00903 0.61 +0.3
Or see this region's nucleotide sequence