Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00902

Experiment: PYE 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00901 and CCNA_00902 are separated by 328 nucleotidesCCNA_00902 and CCNA_00903 are separated by 22 nucleotides CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606 _00901 CCNA_00902: CCNA_00902 - inositol ABC transporter, periplasmic inositol-binding protein IbpA, at 981,935 to 982,915 _00902 CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485 _00903 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2 3at 980.971 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 981.018 kb on + strand, within CCNA_00901at 981.024 kb on + strand, within CCNA_00901at 981.048 kb on + strand, within CCNA_00901at 981.056 kb on - strand, within CCNA_00901at 981.093 kb on - strand, within CCNA_00901at 981.102 kb on + strand, within CCNA_00901at 981.118 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.136 kb on - strand, within CCNA_00901at 981.136 kb on - strand, within CCNA_00901at 981.154 kb on + strand, within CCNA_00901at 981.155 kb on + strand, within CCNA_00901at 981.163 kb on - strand, within CCNA_00901at 981.200 kb on - strand, within CCNA_00901at 981.200 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.228 kb on - strand, within CCNA_00901at 981.317 kb on + strand, within CCNA_00901at 981.325 kb on - strand, within CCNA_00901at 981.325 kb on - strand, within CCNA_00901at 981.382 kb on - strand, within CCNA_00901at 981.386 kb on + strand, within CCNA_00901at 981.386 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.404 kb on - strand, within CCNA_00901at 981.406 kb on + strand, within CCNA_00901at 981.407 kb on - strand, within CCNA_00901at 981.409 kb on - strand, within CCNA_00901at 981.457 kb on - strand, within CCNA_00901at 981.488 kb on - strand, within CCNA_00901at 981.495 kb on + strand, within CCNA_00901at 981.532 kb on + strandat 981.540 kb on - strandat 981.540 kb on - strandat 981.563 kb on - strandat 981.593 kb on - strandat 981.613 kb on + strandat 981.642 kb on - strandat 981.642 kb on - strandat 981.642 kb on - strandat 981.642 kb on - strandat 981.655 kb on - strandat 981.665 kb on - strandat 981.701 kb on + strandat 981.730 kb on + strandat 981.742 kb on + strandat 981.742 kb on + strandat 981.742 kb on + strandat 981.747 kb on + strandat 981.747 kb on + strandat 981.750 kb on - strandat 981.750 kb on - strandat 981.755 kb on - strandat 981.770 kb on + strandat 981.778 kb on + strandat 981.879 kb on + strandat 981.906 kb on - strandat 981.932 kb on + strandat 981.933 kb on - strandat 981.940 kb on - strandat 981.969 kb on - strandat 981.970 kb on + strandat 981.997 kb on - strandat 982.012 kb on - strandat 982.034 kb on - strand, within CCNA_00902at 982.045 kb on + strand, within CCNA_00902at 982.052 kb on + strand, within CCNA_00902at 982.074 kb on + strand, within CCNA_00902at 982.076 kb on + strand, within CCNA_00902at 982.122 kb on - strand, within CCNA_00902at 982.137 kb on - strand, within CCNA_00902at 982.155 kb on - strand, within CCNA_00902at 982.157 kb on + strand, within CCNA_00902at 982.162 kb on + strand, within CCNA_00902at 982.170 kb on + strand, within CCNA_00902at 982.190 kb on - strand, within CCNA_00902at 982.200 kb on + strand, within CCNA_00902at 982.200 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.213 kb on + strand, within CCNA_00902at 982.213 kb on + strand, within CCNA_00902at 982.213 kb on - strand, within CCNA_00902at 982.221 kb on - strand, within CCNA_00902at 982.250 kb on + strand, within CCNA_00902at 982.273 kb on - strand, within CCNA_00902at 982.292 kb on + strand, within CCNA_00902at 982.383 kb on - strand, within CCNA_00902at 982.394 kb on + strand, within CCNA_00902at 982.422 kb on + strandat 982.449 kb on + strand, within CCNA_00902at 982.449 kb on + strand, within CCNA_00902at 982.468 kb on + strand, within CCNA_00902at 982.468 kb on + strand, within CCNA_00902at 982.476 kb on - strand, within CCNA_00902at 982.476 kb on - strand, within CCNA_00902at 982.486 kb on - strand, within CCNA_00902at 982.540 kb on + strand, within CCNA_00902at 982.548 kb on - strand, within CCNA_00902at 982.548 kb on - strand, within CCNA_00902at 982.556 kb on + strand, within CCNA_00902at 982.585 kb on - strand, within CCNA_00902at 982.622 kb on - strand, within CCNA_00902at 982.637 kb on + strand, within CCNA_00902at 982.644 kb on - strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.678 kb on - strand, within CCNA_00902at 982.678 kb on - strand, within CCNA_00902at 982.680 kb on + strand, within CCNA_00902at 982.687 kb on + strand, within CCNA_00902at 982.695 kb on - strand, within CCNA_00902at 982.695 kb on - strand, within CCNA_00902at 982.701 kb on + strand, within CCNA_00902at 982.721 kb on + strand, within CCNA_00902at 982.721 kb on - strand, within CCNA_00902at 982.723 kb on - strand, within CCNA_00902at 982.760 kb on + strand, within CCNA_00902at 982.766 kb on - strand, within CCNA_00902at 982.768 kb on - strand, within CCNA_00902at 982.768 kb on - strand, within CCNA_00902at 982.771 kb on - strand, within CCNA_00902at 982.815 kb on + strand, within CCNA_00902at 982.816 kb on + strand, within CCNA_00902at 982.822 kb on + strandat 982.824 kb on - strandat 982.828 kb on - strandat 982.848 kb on + strandat 982.848 kb on + strandat 982.848 kb on + strandat 982.854 kb on + strandat 982.856 kb on - strandat 982.867 kb on - strandat 982.873 kb on + strandat 982.890 kb on - strandat 982.934 kb on + strandat 982.935 kb on + strandat 982.943 kb on - strandat 983.008 kb on - strandat 983.017 kb on + strandat 983.022 kb on + strandat 983.062 kb on + strandat 983.070 kb on - strandat 983.072 kb on + strandat 983.077 kb on + strandat 983.080 kb on - strandat 983.105 kb on + strand, within CCNA_00903at 983.112 kb on + strand, within CCNA_00903at 983.113 kb on - strand, within CCNA_00903at 983.120 kb on - strand, within CCNA_00903at 983.132 kb on + strand, within CCNA_00903at 983.140 kb on - strand, within CCNA_00903at 983.140 kb on - strand, within CCNA_00903at 983.143 kb on + strand, within CCNA_00903at 983.209 kb on + strand, within CCNA_00903at 983.231 kb on + strandat 983.268 kb on - strand, within CCNA_00903at 983.268 kb on - strand, within CCNA_00903at 983.268 kb on - strand, within CCNA_00903at 983.268 kb on - strand, within CCNA_00903at 983.297 kb on + strand, within CCNA_00903at 983.298 kb on + strand, within CCNA_00903at 983.298 kb on + strand, within CCNA_00903at 983.305 kb on - strand, within CCNA_00903at 983.325 kb on - strand, within CCNA_00903at 983.343 kb on - strandat 983.375 kb on + strand, within CCNA_00903at 983.396 kb on + strand, within CCNA_00903at 983.404 kb on - strand, within CCNA_00903at 983.404 kb on - strand, within CCNA_00903at 983.404 kb on - strand, within CCNA_00903at 983.516 kb on + strand, within CCNA_00903at 983.523 kb on + strand, within CCNA_00903at 983.524 kb on - strand, within CCNA_00903at 983.524 kb on - strand, within CCNA_00903at 983.557 kb on - strand, within CCNA_00903at 983.579 kb on - strand, within CCNA_00903at 983.672 kb on + strand, within CCNA_00903at 983.815 kb on - strand, within CCNA_00903at 983.830 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.882 kb on + strand, within CCNA_00903

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep3 12 days
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980,971 + CCNA_00901 0.24 +0.1
980,971 + CCNA_00901 0.24 +0.1
980,971 + CCNA_00901 0.24 +0.4
980,979 - CCNA_00901 0.25 -0.1
980,979 - CCNA_00901 0.25 -0.9
980,979 - CCNA_00901 0.25 +0.3
980,979 - CCNA_00901 0.25 -0.0
981,018 + CCNA_00901 0.30 -0.2
981,024 + CCNA_00901 0.30 +2.4
981,048 + CCNA_00901 0.33 +0.7
981,056 - CCNA_00901 0.34 +0.1
981,093 - CCNA_00901 0.39 -0.0
981,102 + CCNA_00901 0.40 +1.0
981,118 + CCNA_00901 0.42 +0.6
981,128 + CCNA_00901 0.43 -0.1
981,128 + CCNA_00901 0.43 -0.3
981,128 + CCNA_00901 0.43 -0.9
981,136 - CCNA_00901 0.44 +0.8
981,136 - CCNA_00901 0.44 -0.8
981,154 + CCNA_00901 0.46 -0.2
981,155 + CCNA_00901 0.46 -0.4
981,163 - CCNA_00901 0.47 +0.6
981,200 - CCNA_00901 0.51 -1.1
981,200 - CCNA_00901 0.51 -0.1
981,223 - CCNA_00901 0.54 -0.6
981,223 - CCNA_00901 0.54 -1.4
981,223 - CCNA_00901 0.54 +0.8
981,228 - CCNA_00901 0.55 -0.5
981,317 + CCNA_00901 0.65 -0.1
981,325 - CCNA_00901 0.66 +1.4
981,325 - CCNA_00901 0.66 +0.2
981,382 - CCNA_00901 0.73 -1.0
981,386 + CCNA_00901 0.74 -1.4
981,386 + CCNA_00901 0.74 -0.7
981,401 + CCNA_00901 0.75 -1.2
981,401 + CCNA_00901 0.75 -0.6
981,401 + CCNA_00901 0.75 +1.6
981,404 - CCNA_00901 0.76 -0.6
981,406 + CCNA_00901 0.76 +1.1
981,407 - CCNA_00901 0.76 +2.1
981,409 - CCNA_00901 0.76 +0.5
981,457 - CCNA_00901 0.82 -0.5
981,488 - CCNA_00901 0.86 +0.1
981,495 + CCNA_00901 0.87 +0.2
981,532 + +0.1
981,540 - +0.4
981,540 - +0.0
981,563 - +0.6
981,593 - -0.6
981,613 + -0.9
981,642 - +0.2
981,642 - -0.4
981,642 - +0.1
981,642 - +0.3
981,655 - -0.7
981,665 - +1.1
981,701 + +2.4
981,730 + +0.1
981,742 + +0.4
981,742 + +2.4
981,742 + +0.8
981,747 + +0.4
981,747 + +1.1
981,750 - -1.3
981,750 - -0.7
981,755 - -0.7
981,770 + +0.4
981,778 + +1.8
981,879 + +0.7
981,906 - +0.0
981,932 + +0.1
981,933 - +0.3
981,940 - -0.3
981,969 - +0.2
981,970 + +0.2
981,997 - +0.4
982,012 - +0.3
982,034 - CCNA_00902 0.10 -0.4
982,045 + CCNA_00902 0.11 +0.0
982,052 + CCNA_00902 0.12 +0.6
982,074 + CCNA_00902 0.14 -1.0
982,076 + CCNA_00902 0.14 -0.3
982,122 - CCNA_00902 0.19 -0.9
982,137 - CCNA_00902 0.21 -0.3
982,155 - CCNA_00902 0.22 -2.1
982,157 + CCNA_00902 0.23 +0.2
982,162 + CCNA_00902 0.23 -0.0
982,170 + CCNA_00902 0.24 +0.7
982,190 - CCNA_00902 0.26 -1.1
982,200 + CCNA_00902 0.27 +0.5
982,200 + CCNA_00902 0.27 -0.1
982,205 + CCNA_00902 0.28 -0.9
982,205 + CCNA_00902 0.28 +0.3
982,205 + CCNA_00902 0.28 -0.0
982,213 + CCNA_00902 0.28 -0.7
982,213 + CCNA_00902 0.28 +0.3
982,213 - CCNA_00902 0.28 +1.9
982,221 - CCNA_00902 0.29 -2.3
982,250 + CCNA_00902 0.32 +0.1
982,273 - CCNA_00902 0.34 -1.2
982,292 + CCNA_00902 0.36 -0.3
982,383 - CCNA_00902 0.46 +0.1
982,394 + CCNA_00902 0.47 -1.5
982,422 + +0.8
982,449 + CCNA_00902 0.52 -0.2
982,449 + CCNA_00902 0.52 -0.6
982,468 + CCNA_00902 0.54 -0.1
982,468 + CCNA_00902 0.54 -0.3
982,476 - CCNA_00902 0.55 -0.2
982,476 - CCNA_00902 0.55 -0.4
982,486 - CCNA_00902 0.56 -0.5
982,540 + CCNA_00902 0.62 -0.5
982,548 - CCNA_00902 0.62 -0.9
982,548 - CCNA_00902 0.62 -1.2
982,556 + CCNA_00902 0.63 -1.3
982,585 - CCNA_00902 0.66 -1.7
982,622 - CCNA_00902 0.70 -1.3
982,637 + CCNA_00902 0.72 -1.0
982,644 - CCNA_00902 0.72 -1.3
982,670 + CCNA_00902 0.75 -2.1
982,670 + CCNA_00902 0.75 -0.1
982,670 + CCNA_00902 0.75 +1.4
982,670 + CCNA_00902 0.75 +1.2
982,670 + CCNA_00902 0.75 -0.5
982,678 - CCNA_00902 0.76 -0.2
982,678 - CCNA_00902 0.76 -0.8
982,680 + CCNA_00902 0.76 +0.6
982,687 + CCNA_00902 0.77 -0.4
982,695 - CCNA_00902 0.77 +1.7
982,695 - CCNA_00902 0.77 -1.5
982,701 + CCNA_00902 0.78 +1.2
982,721 + CCNA_00902 0.80 -1.4
982,721 - CCNA_00902 0.80 +0.4
982,723 - CCNA_00902 0.80 -0.3
982,760 + CCNA_00902 0.84 +0.7
982,766 - CCNA_00902 0.85 -2.6
982,768 - CCNA_00902 0.85 -0.6
982,768 - CCNA_00902 0.85 -2.4
982,771 - CCNA_00902 0.85 -1.0
982,815 + CCNA_00902 0.90 -0.3
982,816 + CCNA_00902 0.90 +0.6
982,822 + -0.7
982,824 - +0.8
982,828 - +0.1
982,848 + -1.0
982,848 + -0.3
982,848 + +1.2
982,854 + +1.3
982,856 - -0.1
982,867 - -0.3
982,873 + +0.8
982,890 - -2.1
982,934 + +0.8
982,935 + +0.2
982,943 - -1.2
983,008 - -1.4
983,017 + +0.4
983,022 + -1.4
983,062 + +0.6
983,070 - +0.0
983,072 + -1.6
983,077 + -1.2
983,080 - -1.2
983,105 + CCNA_00903 0.11 -0.8
983,112 + CCNA_00903 0.11 -1.5
983,113 - CCNA_00903 0.11 -0.4
983,120 - CCNA_00903 0.12 -0.2
983,132 + CCNA_00903 0.13 -0.8
983,140 - CCNA_00903 0.13 +0.4
983,140 - CCNA_00903 0.13 -0.0
983,143 + CCNA_00903 0.13 -0.2
983,209 + CCNA_00903 0.18 +0.4
983,231 + +3.0
983,268 - CCNA_00903 0.21 -0.9
983,268 - CCNA_00903 0.21 -0.8
983,268 - CCNA_00903 0.21 -0.9
983,268 - CCNA_00903 0.21 -0.8
983,297 + CCNA_00903 0.23 -0.9
983,298 + CCNA_00903 0.23 +0.4
983,298 + CCNA_00903 0.23 +0.7
983,305 - CCNA_00903 0.24 -0.1
983,325 - CCNA_00903 0.25 +0.4
983,343 - -0.2
983,375 + CCNA_00903 0.28 -0.3
983,396 + CCNA_00903 0.30 +0.5
983,404 - CCNA_00903 0.30 -1.2
983,404 - CCNA_00903 0.30 -1.2
983,404 - CCNA_00903 0.30 -0.8
983,516 + CCNA_00903 0.37 -1.1
983,523 + CCNA_00903 0.38 -0.1
983,524 - CCNA_00903 0.38 -1.1
983,524 - CCNA_00903 0.38 +0.1
983,557 - CCNA_00903 0.40 -0.7
983,579 - CCNA_00903 0.41 -1.0
983,672 + CCNA_00903 0.47 -1.5
983,815 - CCNA_00903 0.57 -0.5
983,830 + CCNA_00903 0.58 +0.8
983,835 + CCNA_00903 0.58 -0.9
983,835 + CCNA_00903 0.58 -1.3
983,835 + CCNA_00903 0.58 +0.8
983,835 + CCNA_00903 0.58 +1.4
983,843 - CCNA_00903 0.58 -1.5
983,843 - CCNA_00903 0.58 -0.6
983,843 - CCNA_00903 0.58 +0.1
983,843 - CCNA_00903 0.58 +0.4
983,843 - CCNA_00903 0.58 -0.8
983,843 - CCNA_00903 0.58 -1.1
983,843 - CCNA_00903 0.58 +1.1
983,882 + CCNA_00903 0.61 +0.3

Or see this region's nucleotide sequence