Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3039

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3038 and DvMF_3039 are separated by 177 nucleotidesDvMF_3039 and DvMF_3040 are separated by 443 nucleotidesDvMF_3040 and DvMF_3041 overlap by 4 nucleotides DvMF_3038: DvMF_3038 - transcriptional regulator, TetR family (RefSeq), at 3,835,379 to 3,836,008 _3038 DvMF_3039: DvMF_3039 - peptidase M24 (RefSeq), at 3,836,186 to 3,837,445 _3039 DvMF_3040: DvMF_3040 - coenzyme A binding protein (RefSeq), at 3,837,889 to 3,838,311 _3040 DvMF_3041: DvMF_3041 - protein of unknown function UPF0153 (RefSeq), at 3,838,308 to 3,838,835 _3041 Position (kb) 3836 3837 3838Strain fitness (log2 ratio) -1 0 1 2 3at 3835.253 kb on + strandat 3835.316 kb on + strandat 3836.312 kb on + strand, within DvMF_3039at 3836.522 kb on + strand, within DvMF_3039at 3836.522 kb on + strand, within DvMF_3039at 3836.522 kb on + strand, within DvMF_3039at 3836.642 kb on + strand, within DvMF_3039at 3836.952 kb on + strand, within DvMF_3039at 3837.001 kb on - strand, within DvMF_3039at 3837.001 kb on - strand, within DvMF_3039at 3837.001 kb on - strand, within DvMF_3039at 3837.040 kb on + strand, within DvMF_3039at 3837.060 kb on + strand, within DvMF_3039at 3837.060 kb on + strand, within DvMF_3039at 3837.429 kb on + strandat 3837.491 kb on + strandat 3837.499 kb on - strandat 3837.499 kb on - strandat 3837.546 kb on - strandat 3837.670 kb on - strandat 3837.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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3,835,253 + +0.6
3,835,316 + +0.4
3,836,312 + DvMF_3039 0.10 +0.5
3,836,522 + DvMF_3039 0.27 -0.1
3,836,522 + DvMF_3039 0.27 -0.4
3,836,522 + DvMF_3039 0.27 +0.5
3,836,642 + DvMF_3039 0.36 +0.5
3,836,952 + DvMF_3039 0.61 +0.5
3,837,001 - DvMF_3039 0.65 -0.2
3,837,001 - DvMF_3039 0.65 -0.4
3,837,001 - DvMF_3039 0.65 +0.4
3,837,040 + DvMF_3039 0.68 +0.1
3,837,060 + DvMF_3039 0.69 -0.8
3,837,060 + DvMF_3039 0.69 +0.8
3,837,429 + -1.6
3,837,491 + +0.7
3,837,499 - +0.5
3,837,499 - +0.8
3,837,546 - +3.4
3,837,670 - +0.8
3,837,943 - -0.2

Or see this region's nucleotide sequence