Experiment: 8 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2972 and DvMF_2973 are separated by 336 nucleotides DvMF_2973 and DvMF_2974 are separated by 87 nucleotides DvMF_2974 and DvMF_2975 are separated by 288 nucleotides
DvMF_2972: DvMF_2972 - Glycerophosphodiester phosphodiesterase (RefSeq), at 3,747,860 to 3,748,771
_2972
DvMF_2973: DvMF_2973 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,749,108 to 3,750,070
_2973
DvMF_2974: DvMF_2974 - transcriptional regulator, HxlR family (RefSeq), at 3,750,158 to 3,750,640
_2974
DvMF_2975: DvMF_2975 - nitroreductase (RefSeq), at 3,750,929 to 3,751,438
_2975
Position (kb)
3749
3750
3751 Strain fitness (log2 ratio)
-1
0
1
2 at 3748.166 kb on - strand, within DvMF_2972 at 3748.303 kb on - strand, within DvMF_2972 at 3748.400 kb on + strand, within DvMF_2972 at 3748.524 kb on - strand, within DvMF_2972 at 3748.536 kb on - strand, within DvMF_2972 at 3748.547 kb on + strand, within DvMF_2972 at 3748.747 kb on - strand at 3748.775 kb on - strand at 3748.788 kb on + strand at 3748.920 kb on - strand at 3749.146 kb on - strand at 3749.146 kb on - strand at 3749.208 kb on + strand, within DvMF_2973 at 3749.216 kb on - strand, within DvMF_2973 at 3749.221 kb on - strand, within DvMF_2973 at 3749.381 kb on + strand, within DvMF_2973 at 3749.692 kb on + strand, within DvMF_2973 at 3749.700 kb on - strand, within DvMF_2973 at 3749.817 kb on + strand, within DvMF_2973 at 3749.980 kb on - strand at 3749.989 kb on - strand at 3749.999 kb on - strand at 3750.179 kb on + strand at 3750.477 kb on - strand, within DvMF_2974 at 3750.521 kb on - strand, within DvMF_2974 at 3750.622 kb on - strand at 3750.993 kb on - strand, within DvMF_2975 at 3751.030 kb on + strand, within DvMF_2975 at 3751.058 kb on - strand, within DvMF_2975
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 30C remove 3,748,166 - DvMF_2972 0.34 +1.5 3,748,303 - DvMF_2972 0.49 +0.6 3,748,400 + DvMF_2972 0.59 +0.7 3,748,524 - DvMF_2972 0.73 +0.4 3,748,536 - DvMF_2972 0.74 +1.2 3,748,547 + DvMF_2972 0.75 +0.1 3,748,747 - +0.3 3,748,775 - +1.8 3,748,788 + +0.4 3,748,920 - +0.9 3,749,146 - +1.0 3,749,146 - -0.1 3,749,208 + DvMF_2973 0.10 -0.0 3,749,216 - DvMF_2973 0.11 +0.2 3,749,221 - DvMF_2973 0.12 +0.2 3,749,381 + DvMF_2973 0.28 +0.4 3,749,692 + DvMF_2973 0.61 -0.3 3,749,700 - DvMF_2973 0.61 +0.7 3,749,817 + DvMF_2973 0.74 -0.4 3,749,980 - +0.6 3,749,989 - +0.8 3,749,999 - +1.1 3,750,179 + -0.0 3,750,477 - DvMF_2974 0.66 +1.1 3,750,521 - DvMF_2974 0.75 +1.1 3,750,622 - +1.3 3,750,993 - DvMF_2975 0.13 +0.5 3,751,030 + DvMF_2975 0.20 +0.7 3,751,058 - DvMF_2975 0.25 +0.1
Or see this region's nucleotide sequence