Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2973

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2972 and DvMF_2973 are separated by 336 nucleotidesDvMF_2973 and DvMF_2974 are separated by 87 nucleotidesDvMF_2974 and DvMF_2975 are separated by 288 nucleotides DvMF_2972: DvMF_2972 - Glycerophosphodiester phosphodiesterase (RefSeq), at 3,747,860 to 3,748,771 _2972 DvMF_2973: DvMF_2973 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,749,108 to 3,750,070 _2973 DvMF_2974: DvMF_2974 - transcriptional regulator, HxlR family (RefSeq), at 3,750,158 to 3,750,640 _2974 DvMF_2975: DvMF_2975 - nitroreductase (RefSeq), at 3,750,929 to 3,751,438 _2975 Position (kb) 3749 3750 3751Strain fitness (log2 ratio) -1 0 1 2at 3748.166 kb on - strand, within DvMF_2972at 3748.303 kb on - strand, within DvMF_2972at 3748.400 kb on + strand, within DvMF_2972at 3748.524 kb on - strand, within DvMF_2972at 3748.536 kb on - strand, within DvMF_2972at 3748.547 kb on + strand, within DvMF_2972at 3748.747 kb on - strandat 3748.775 kb on - strandat 3748.788 kb on + strandat 3748.920 kb on - strandat 3749.146 kb on - strandat 3749.146 kb on - strandat 3749.208 kb on + strand, within DvMF_2973at 3749.216 kb on - strand, within DvMF_2973at 3749.221 kb on - strand, within DvMF_2973at 3749.381 kb on + strand, within DvMF_2973at 3749.692 kb on + strand, within DvMF_2973at 3749.700 kb on - strand, within DvMF_2973at 3749.817 kb on + strand, within DvMF_2973at 3749.980 kb on - strandat 3749.989 kb on - strandat 3749.999 kb on - strandat 3750.179 kb on + strandat 3750.477 kb on - strand, within DvMF_2974at 3750.521 kb on - strand, within DvMF_2974at 3750.622 kb on - strandat 3750.993 kb on - strand, within DvMF_2975at 3751.030 kb on + strand, within DvMF_2975at 3751.058 kb on - strand, within DvMF_2975

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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3,748,166 - DvMF_2972 0.34 +1.5
3,748,303 - DvMF_2972 0.49 +0.6
3,748,400 + DvMF_2972 0.59 +0.7
3,748,524 - DvMF_2972 0.73 +0.4
3,748,536 - DvMF_2972 0.74 +1.2
3,748,547 + DvMF_2972 0.75 +0.1
3,748,747 - +0.3
3,748,775 - +1.8
3,748,788 + +0.4
3,748,920 - +0.9
3,749,146 - +1.0
3,749,146 - -0.1
3,749,208 + DvMF_2973 0.10 -0.0
3,749,216 - DvMF_2973 0.11 +0.2
3,749,221 - DvMF_2973 0.12 +0.2
3,749,381 + DvMF_2973 0.28 +0.4
3,749,692 + DvMF_2973 0.61 -0.3
3,749,700 - DvMF_2973 0.61 +0.7
3,749,817 + DvMF_2973 0.74 -0.4
3,749,980 - +0.6
3,749,989 - +0.8
3,749,999 - +1.1
3,750,179 + -0.0
3,750,477 - DvMF_2974 0.66 +1.1
3,750,521 - DvMF_2974 0.75 +1.1
3,750,622 - +1.3
3,750,993 - DvMF_2975 0.13 +0.5
3,751,030 + DvMF_2975 0.20 +0.7
3,751,058 - DvMF_2975 0.25 +0.1

Or see this region's nucleotide sequence