Experiment: 8 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2967 and DvMF_2968 are separated by 180 nucleotides DvMF_2968 and DvMF_2969 are separated by 318 nucleotides
DvMF_2967: DvMF_2967 - RarD protein, DMT superfamily transporter (RefSeq), at 3,742,086 to 3,743,000
_2967
DvMF_2968: DvMF_2968 - extracellular solute-binding protein family 1 (RefSeq), at 3,743,181 to 3,744,251
_2968
DvMF_2969: DvMF_2969 - ABC transporter related (RefSeq), at 3,744,570 to 3,745,826
_2969
Position (kb)
3743
3744
3745 Strain fitness (log2 ratio)
-1
0
1
2 at 3742.615 kb on - strand, within DvMF_2967 at 3742.757 kb on + strand, within DvMF_2967 at 3742.827 kb on - strand, within DvMF_2967 at 3742.932 kb on + strand at 3743.052 kb on - strand at 3743.220 kb on + strand at 3743.267 kb on - strand at 3743.486 kb on + strand, within DvMF_2968 at 3743.551 kb on - strand, within DvMF_2968 at 3743.551 kb on - strand, within DvMF_2968 at 3743.555 kb on + strand, within DvMF_2968 at 3743.555 kb on + strand, within DvMF_2968 at 3743.622 kb on + strand, within DvMF_2968 at 3743.728 kb on + strand, within DvMF_2968 at 3744.104 kb on - strand, within DvMF_2968 at 3744.555 kb on + strand at 3744.566 kb on - strand at 3744.679 kb on - strand at 3744.731 kb on - strand, within DvMF_2969 at 3744.804 kb on - strand, within DvMF_2969 at 3744.939 kb on + strand, within DvMF_2969 at 3744.992 kb on - strand, within DvMF_2969 at 3744.992 kb on - strand, within DvMF_2969 at 3745.136 kb on + strand, within DvMF_2969
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 30C remove 3,742,615 - DvMF_2967 0.58 -0.8 3,742,757 + DvMF_2967 0.73 +0.6 3,742,827 - DvMF_2967 0.81 -0.3 3,742,932 + +0.6 3,743,052 - -1.4 3,743,220 + +0.5 3,743,267 - +0.8 3,743,486 + DvMF_2968 0.28 +1.0 3,743,551 - DvMF_2968 0.35 +0.7 3,743,551 - DvMF_2968 0.35 +0.4 3,743,555 + DvMF_2968 0.35 -0.1 3,743,555 + DvMF_2968 0.35 +1.0 3,743,622 + DvMF_2968 0.41 +0.7 3,743,728 + DvMF_2968 0.51 +0.8 3,744,104 - DvMF_2968 0.86 +0.6 3,744,555 + +0.3 3,744,566 - +0.9 3,744,679 - +0.2 3,744,731 - DvMF_2969 0.13 +0.7 3,744,804 - DvMF_2969 0.19 +1.3 3,744,939 + DvMF_2969 0.29 +1.4 3,744,992 - DvMF_2969 0.34 +0.6 3,744,992 - DvMF_2969 0.34 +0.5 3,745,136 + DvMF_2969 0.45 +1.8
Or see this region's nucleotide sequence