Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2544

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2542 and DvMF_2543 are separated by 73 nucleotidesDvMF_2543 and DvMF_2544 overlap by 4 nucleotidesDvMF_2544 and DvMF_2545 are separated by 337 nucleotides DvMF_2542: DvMF_2542 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,212,733 to 3,214,526 _2542 DvMF_2543: DvMF_2543 - response regulator receiver protein (RefSeq), at 3,214,600 to 3,214,965 _2543 DvMF_2544: DvMF_2544 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,214,962 to 3,216,506 _2544 DvMF_2545: DvMF_2545 - metal dependent phosphohydrolase (RefSeq), at 3,216,844 to 3,217,653 _2545 Position (kb) 3214 3215 3216 3217Strain fitness (log2 ratio) -1 0 1at 3213.964 kb on + strand, within DvMF_2542at 3214.268 kb on + strand, within DvMF_2542at 3214.453 kb on + strandat 3214.463 kb on + strandat 3214.482 kb on - strandat 3214.536 kb on + strandat 3214.771 kb on - strand, within DvMF_2543at 3214.855 kb on + strand, within DvMF_2543at 3214.986 kb on + strandat 3215.245 kb on - strand, within DvMF_2544at 3215.476 kb on + strand, within DvMF_2544at 3215.476 kb on + strand, within DvMF_2544at 3215.541 kb on - strand, within DvMF_2544at 3215.552 kb on + strand, within DvMF_2544at 3215.898 kb on + strand, within DvMF_2544at 3215.908 kb on + strand, within DvMF_2544at 3216.155 kb on + strand, within DvMF_2544at 3216.159 kb on - strand, within DvMF_2544at 3216.160 kb on + strand, within DvMF_2544at 3216.204 kb on - strand, within DvMF_2544at 3216.213 kb on + strand, within DvMF_2544at 3216.218 kb on + strand, within DvMF_2544at 3216.221 kb on - strand, within DvMF_2544at 3216.221 kb on - strand, within DvMF_2544at 3216.226 kb on - strand, within DvMF_2544at 3216.261 kb on + strand, within DvMF_2544at 3216.358 kb on + strandat 3216.358 kb on + strandat 3216.402 kb on - strandat 3216.446 kb on - strandat 3216.565 kb on + strandat 3216.668 kb on + strandat 3216.874 kb on - strandat 3216.907 kb on + strandat 3216.930 kb on - strand, within DvMF_2545at 3217.027 kb on + strand, within DvMF_2545at 3217.103 kb on + strand, within DvMF_2545at 3217.120 kb on + strand, within DvMF_2545at 3217.120 kb on + strand, within DvMF_2545

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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3,213,964 + DvMF_2542 0.69 +0.8
3,214,268 + DvMF_2542 0.86 +0.7
3,214,453 + +0.6
3,214,463 + +1.6
3,214,482 - +1.0
3,214,536 + -0.7
3,214,771 - DvMF_2543 0.47 -1.0
3,214,855 + DvMF_2543 0.70 -0.9
3,214,986 + +0.3
3,215,245 - DvMF_2544 0.18 -0.2
3,215,476 + DvMF_2544 0.33 +0.3
3,215,476 + DvMF_2544 0.33 +0.5
3,215,541 - DvMF_2544 0.37 +0.0
3,215,552 + DvMF_2544 0.38 +0.3
3,215,898 + DvMF_2544 0.61 +0.5
3,215,908 + DvMF_2544 0.61 +0.5
3,216,155 + DvMF_2544 0.77 +0.1
3,216,159 - DvMF_2544 0.77 -0.8
3,216,160 + DvMF_2544 0.78 +1.2
3,216,204 - DvMF_2544 0.80 -0.2
3,216,213 + DvMF_2544 0.81 -0.0
3,216,218 + DvMF_2544 0.81 +0.4
3,216,221 - DvMF_2544 0.81 -0.8
3,216,221 - DvMF_2544 0.81 +0.2
3,216,226 - DvMF_2544 0.82 +0.2
3,216,261 + DvMF_2544 0.84 +0.5
3,216,358 + +0.2
3,216,358 + +0.3
3,216,402 - +0.2
3,216,446 - +0.0
3,216,565 + +0.8
3,216,668 + +0.6
3,216,874 - +0.5
3,216,907 + -0.4
3,216,930 - DvMF_2545 0.11 +0.2
3,217,027 + DvMF_2545 0.23 -0.1
3,217,103 + DvMF_2545 0.32 +0.8
3,217,120 + DvMF_2545 0.34 +0.4
3,217,120 + DvMF_2545 0.34 +0.0

Or see this region's nucleotide sequence