Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2541

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2539 and DvMF_2540 are separated by 56 nucleotidesDvMF_2540 and DvMF_2541 are separated by 134 nucleotidesDvMF_2541 and DvMF_2542 are separated by 95 nucleotides DvMF_2539: DvMF_2539 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,207,324 to 3,209,369 _2539 DvMF_2540: DvMF_2540 - response regulator receiver protein (RefSeq), at 3,209,426 to 3,209,878 _2540 DvMF_2541: DvMF_2541 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,210,013 to 3,212,637 _2541 DvMF_2542: DvMF_2542 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,212,733 to 3,214,526 _2542 Position (kb) 3210 3211 3212 3213Strain fitness (log2 ratio) -1 0 1 2at 3209.205 kb on - strandat 3209.256 kb on + strandat 3209.267 kb on + strandat 3209.267 kb on + strandat 3209.334 kb on - strandat 3209.334 kb on - strandat 3209.406 kb on + strandat 3209.443 kb on + strandat 3209.685 kb on + strand, within DvMF_2540at 3209.754 kb on + strand, within DvMF_2540at 3209.754 kb on + strand, within DvMF_2540at 3209.762 kb on - strand, within DvMF_2540at 3210.100 kb on - strandat 3210.140 kb on + strandat 3210.227 kb on + strandat 3210.316 kb on + strand, within DvMF_2541at 3210.425 kb on - strand, within DvMF_2541at 3210.602 kb on + strand, within DvMF_2541at 3210.645 kb on + strand, within DvMF_2541at 3210.743 kb on + strand, within DvMF_2541at 3211.036 kb on - strand, within DvMF_2541at 3211.124 kb on + strand, within DvMF_2541at 3211.190 kb on - strand, within DvMF_2541at 3211.209 kb on + strand, within DvMF_2541at 3211.449 kb on + strand, within DvMF_2541at 3211.564 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3212.063 kb on + strand, within DvMF_2541at 3212.337 kb on + strand, within DvMF_2541at 3212.462 kb on - strandat 3212.518 kb on + strandat 3212.591 kb on - strandat 3212.694 kb on - strandat 3212.715 kb on - strandat 3212.715 kb on - strandat 3212.837 kb on - strandat 3213.129 kb on + strand, within DvMF_2542at 3213.299 kb on - strand, within DvMF_2542at 3213.542 kb on + strand, within DvMF_2542

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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3,209,205 - +0.2
3,209,256 + -0.1
3,209,267 + +0.2
3,209,267 + -0.0
3,209,334 - +0.4
3,209,334 - -0.1
3,209,406 + +0.7
3,209,443 + +0.8
3,209,685 + DvMF_2540 0.57 -0.5
3,209,754 + DvMF_2540 0.72 +0.1
3,209,754 + DvMF_2540 0.72 +0.2
3,209,762 - DvMF_2540 0.74 +0.5
3,210,100 - +0.4
3,210,140 + -0.2
3,210,227 + -0.3
3,210,316 + DvMF_2541 0.12 +0.1
3,210,425 - DvMF_2541 0.16 -0.3
3,210,602 + DvMF_2541 0.22 +0.4
3,210,645 + DvMF_2541 0.24 -0.1
3,210,743 + DvMF_2541 0.28 +0.4
3,211,036 - DvMF_2541 0.39 +0.2
3,211,124 + DvMF_2541 0.42 +0.6
3,211,190 - DvMF_2541 0.45 +0.1
3,211,209 + DvMF_2541 0.46 +0.3
3,211,449 + DvMF_2541 0.55 +0.2
3,211,564 + DvMF_2541 0.59 +1.1
3,211,874 + DvMF_2541 0.71 +0.1
3,211,874 + DvMF_2541 0.71 +0.1
3,211,874 + DvMF_2541 0.71 +0.2
3,211,874 + DvMF_2541 0.71 -0.1
3,212,063 + DvMF_2541 0.78 +0.2
3,212,337 + DvMF_2541 0.89 -0.3
3,212,462 - -0.3
3,212,518 + -0.1
3,212,591 - -0.3
3,212,694 - +0.5
3,212,715 - +0.9
3,212,715 - +0.4
3,212,837 - +1.8
3,213,129 + DvMF_2542 0.22 +0.5
3,213,299 - DvMF_2542 0.32 +0.0
3,213,542 + DvMF_2542 0.45 +0.5

Or see this region's nucleotide sequence