Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2506

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2504 and DvMF_2505 are separated by 63 nucleotidesDvMF_2505 and DvMF_2506 are separated by 448 nucleotidesDvMF_2506 and DvMF_2507 are separated by 152 nucleotidesDvMF_2507 and DvMF_2508 are separated by 376 nucleotides DvMF_2504: DvMF_2504 - no description, at 3,157,805 to 3,158,798 _2504 DvMF_2505: DvMF_2505 - protein of unknown function UPF0047 (RefSeq), at 3,158,862 to 3,159,257 _2505 DvMF_2506: DvMF_2506 - selenocysteine-specific translation elongation factor (RefSeq), at 3,159,706 to 3,161,658 _2506 DvMF_2507: DvMF_2507 - hypothetical protein (RefSeq), at 3,161,811 to 3,162,074 _2507 DvMF_2508: DvMF_2508 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 3,162,451 to 3,164,721 _2508 Position (kb) 3159 3160 3161 3162Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3158.708 kb on + strandat 3158.720 kb on + strandat 3158.792 kb on + strandat 3158.855 kb on + strandat 3158.873 kb on - strandat 3158.998 kb on + strand, within DvMF_2505at 3159.125 kb on + strand, within DvMF_2505at 3159.139 kb on + strand, within DvMF_2505at 3159.139 kb on + strand, within DvMF_2505at 3159.144 kb on + strand, within DvMF_2505at 3159.265 kb on + strandat 3159.310 kb on + strandat 3159.363 kb on + strandat 3159.450 kb on + strandat 3159.547 kb on - strandat 3159.715 kb on + strandat 3159.744 kb on + strandat 3159.991 kb on + strand, within DvMF_2506at 3160.017 kb on - strand, within DvMF_2506at 3160.310 kb on + strand, within DvMF_2506at 3160.522 kb on - strand, within DvMF_2506at 3160.524 kb on + strand, within DvMF_2506at 3160.980 kb on + strand, within DvMF_2506at 3160.988 kb on - strand, within DvMF_2506at 3161.299 kb on - strand, within DvMF_2506at 3161.707 kb on + strandat 3162.136 kb on + strandat 3162.261 kb on - strandat 3162.366 kb on + strandat 3162.374 kb on - strandat 3162.374 kb on - strandat 3162.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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3,158,708 + -3.7
3,158,720 + -5.3
3,158,792 + +0.9
3,158,855 + +0.3
3,158,873 - -0.2
3,158,998 + DvMF_2505 0.34 +1.5
3,159,125 + DvMF_2505 0.66 +0.5
3,159,139 + DvMF_2505 0.70 +0.8
3,159,139 + DvMF_2505 0.70 +0.3
3,159,144 + DvMF_2505 0.71 +0.5
3,159,265 + -0.2
3,159,310 + +0.3
3,159,363 + +0.7
3,159,450 + +0.6
3,159,547 - -2.4
3,159,715 + -0.7
3,159,744 + -0.8
3,159,991 + DvMF_2506 0.15 -1.8
3,160,017 - DvMF_2506 0.16 -0.2
3,160,310 + DvMF_2506 0.31 -2.4
3,160,522 - DvMF_2506 0.42 -1.8
3,160,524 + DvMF_2506 0.42 -1.8
3,160,980 + DvMF_2506 0.65 +0.8
3,160,988 - DvMF_2506 0.66 -2.8
3,161,299 - DvMF_2506 0.82 -1.2
3,161,707 + +0.6
3,162,136 + +0.7
3,162,261 - +0.4
3,162,366 + +1.3
3,162,374 - +0.3
3,162,374 - +0.5
3,162,428 - -0.4

Or see this region's nucleotide sequence