Experiment: 8 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2198 and DvMF_2199 are separated by 283 nucleotides DvMF_2199 and DvMF_2200 are separated by 288 nucleotides
DvMF_2198: DvMF_2198 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,747,636 to 2,751,232
_2198
DvMF_2199: DvMF_2199 - hypothetical protein (RefSeq), at 2,751,516 to 2,752,109
_2199
DvMF_2200: DvMF_2200 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,752,398 to 2,753,777
_2200
Position (kb)
2751
2752
2753 Strain fitness (log2 ratio)
-1
0
1 at 2750.524 kb on - strand, within DvMF_2198 at 2750.628 kb on + strand, within DvMF_2198 at 2750.740 kb on + strand, within DvMF_2198 at 2750.792 kb on + strand, within DvMF_2198 at 2750.808 kb on - strand, within DvMF_2198 at 2750.816 kb on + strand, within DvMF_2198 at 2750.860 kb on + strand, within DvMF_2198 at 2750.873 kb on + strand at 2750.881 kb on - strand at 2750.991 kb on + strand at 2751.048 kb on + strand at 2751.065 kb on + strand at 2751.185 kb on - strand at 2751.242 kb on - strand at 2751.322 kb on - strand at 2751.327 kb on - strand at 2751.573 kb on - strand at 2751.573 kb on - strand at 2751.739 kb on - strand, within DvMF_2199 at 2751.784 kb on - strand, within DvMF_2199 at 2751.971 kb on - strand, within DvMF_2199 at 2752.022 kb on + strand, within DvMF_2199 at 2752.066 kb on + strand at 2752.184 kb on + strand at 2752.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 30C remove 2,750,524 - DvMF_2198 0.80 +1.3 2,750,628 + DvMF_2198 0.83 +1.2 2,750,740 + DvMF_2198 0.86 +0.3 2,750,792 + DvMF_2198 0.88 +0.8 2,750,808 - DvMF_2198 0.88 +0.7 2,750,816 + DvMF_2198 0.88 +0.5 2,750,860 + DvMF_2198 0.90 +0.7 2,750,873 + -0.3 2,750,881 - +0.7 2,750,991 + -0.2 2,751,048 + +0.1 2,751,065 + +0.4 2,751,185 - +0.3 2,751,242 - +0.6 2,751,322 - +0.3 2,751,327 - +0.5 2,751,573 - +0.4 2,751,573 - +0.3 2,751,739 - DvMF_2199 0.38 +0.4 2,751,784 - DvMF_2199 0.45 -0.2 2,751,971 - DvMF_2199 0.77 -0.2 2,752,022 + DvMF_2199 0.85 +0.3 2,752,066 + +0.2 2,752,184 + +0.6 2,752,221 - +0.6
Or see this region's nucleotide sequence