Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1976

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1974 and DvMF_1975 are separated by 10 nucleotidesDvMF_1975 and DvMF_1976 overlap by 1 nucleotidesDvMF_1976 and DvMF_1977 are separated by 2 nucleotidesDvMF_1977 and 11504568 are separated by 186 nucleotides11504568 and 11646931 overlap by 32 nucleotides11646931 and 11789323 overlap by 32 nucleotides11789323 and 11504569 are separated by 0 nucleotides11504569 and 11646932 overlap by 35 nucleotides11646932 and 11789324 overlap by 35 nucleotides11789324 and 11504570 are separated by 0 nucleotides11504570 and 11646933 overlap by 32 nucleotides11646933 and 11789325 overlap by 32 nucleotides11789325 and 11504571 are separated by 0 nucleotides11504571 and 11646934 overlap by 34 nucleotides11646934 and 11789326 overlap by 34 nucleotides11789326 and 11504572 are separated by 0 nucleotides11504572 and 11646935 overlap by 32 nucleotides11646935 and 11789327 overlap by 32 nucleotides11789327 and 11504573 are separated by 0 nucleotides11504573 and 11646936 overlap by 33 nucleotides11646936 and 11789328 overlap by 33 nucleotides11789328 and 11504574 are separated by 0 nucleotides11504574 and 11646937 overlap by 32 nucleotides11646937 and 11789329 overlap by 32 nucleotides11789329 and 11504575 are separated by 0 nucleotides11504575 and 11646938 overlap by 35 nucleotides11646938 and 11789330 overlap by 35 nucleotides11789330 and 11504576 are separated by 0 nucleotides11504576 and 11646939 overlap by 32 nucleotides11646939 and 11789331 overlap by 32 nucleotides11789331 and 11504577 are separated by 0 nucleotides11504577 and 11646940 overlap by 35 nucleotides11646940 and 11789332 overlap by 35 nucleotides11789332 and 11504578 are separated by 0 nucleotides11504578 and 11646941 overlap by 32 nucleotides11646941 and 11789333 overlap by 32 nucleotides11789333 and 11504579 are separated by 0 nucleotides11504579 and 11646942 overlap by 35 nucleotides11646942 and 11789334 overlap by 35 nucleotides11789334 and 11504580 are separated by 0 nucleotides11504580 and 11646943 overlap by 32 nucleotides11646943 and 11789335 overlap by 32 nucleotides11789335 and 11504581 are separated by 0 nucleotides11504581 and 11646944 overlap by 33 nucleotides11646944 and 11789336 overlap by 33 nucleotides11789336 and 11504582 are separated by 0 nucleotides11504582 and 11646945 overlap by 32 nucleotides11646945 and 11789337 overlap by 32 nucleotides11789337 and 11504583 are separated by 0 nucleotides DvMF_1974: DvMF_1974 - CRISPR-associated protein, Csd2 family (RefSeq), at 2,441,451 to 2,442,404 _1974 DvMF_1975: DvMF_1975 - CRISPR-associated protein Cas4 (RefSeq), at 2,442,415 to 2,443,182 _1975 DvMF_1976: DvMF_1976 - CRISPR-associated protein Cas1 (RefSeq), at 2,443,182 to 2,444,213 _1976 DvMF_1977: DvMF_1977 - CRISPR-associated protein Cas2 (RefSeq), at 2,444,216 to 2,444,506 _1977 11504568 - no description, at 2,444,693 to 2,444,724 11504568 11646931 - no description, at 2,444,693 to 2,444,724 11646931 11789323 - no description, at 2,444,693 to 2,444,724 11789323 11504569 - no description, at 2,444,725 to 2,444,759 11504569 11646932 - no description, at 2,444,725 to 2,444,759 11646932 11789324 - no description, at 2,444,725 to 2,444,759 11789324 11504570 - no description, at 2,444,760 to 2,444,791 11504570 11646933 - no description, at 2,444,760 to 2,444,791 11646933 11789325 - no description, at 2,444,760 to 2,444,791 11789325 11504571 - no description, at 2,444,792 to 2,444,825 11504571 11646934 - no description, at 2,444,792 to 2,444,825 11646934 11789326 - no description, at 2,444,792 to 2,444,825 11789326 11504572 - no description, at 2,444,826 to 2,444,857 11504572 11646935 - no description, at 2,444,826 to 2,444,857 11646935 11789327 - no description, at 2,444,826 to 2,444,857 11789327 11504573 - no description, at 2,444,858 to 2,444,890 11504573 11646936 - no description, at 2,444,858 to 2,444,890 11646936 11789328 - no description, at 2,444,858 to 2,444,890 11789328 11504574 - no description, at 2,444,891 to 2,444,922 11504574 11646937 - no description, at 2,444,891 to 2,444,922 11646937 11789329 - no description, at 2,444,891 to 2,444,922 11789329 11504575 - no description, at 2,444,923 to 2,444,957 11504575 11646938 - no description, at 2,444,923 to 2,444,957 11646938 11789330 - no description, at 2,444,923 to 2,444,957 11789330 11504576 - no description, at 2,444,958 to 2,444,989 11504576 11646939 - no description, at 2,444,958 to 2,444,989 11646939 11789331 - no description, at 2,444,958 to 2,444,989 11789331 11504577 - no description, at 2,444,990 to 2,445,024 11504577 11646940 - no description, at 2,444,990 to 2,445,024 11646940 11789332 - no description, at 2,444,990 to 2,445,024 11789332 11504578 - no description, at 2,445,025 to 2,445,056 11504578 11646941 - no description, at 2,445,025 to 2,445,056 11646941 11789333 - no description, at 2,445,025 to 2,445,056 11789333 11504579 - no description, at 2,445,057 to 2,445,091 11504579 11646942 - no description, at 2,445,057 to 2,445,091 11646942 11789334 - no description, at 2,445,057 to 2,445,091 11789334 11504580 - no description, at 2,445,092 to 2,445,123 11504580 11646943 - no description, at 2,445,092 to 2,445,123 11646943 11789335 - no description, at 2,445,092 to 2,445,123 11789335 11504581 - no description, at 2,445,124 to 2,445,156 11504581 11646944 - no description, at 2,445,124 to 2,445,156 11646944 11789336 - no description, at 2,445,124 to 2,445,156 11789336 11504582 - no description, at 2,445,157 to 2,445,188 11504582 11646945 - no description, at 2,445,157 to 2,445,188 11646945 11789337 - no description, at 2,445,157 to 2,445,188 11789337 11504583 - no description, at 2,445,189 to 2,445,221 11504583 11646946 - no description, at 2,445,189 to 2,445,221 11646946 11789338 - no description, at 2,445,189 to 2,445,221 11789338 Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -1 0 1 2at 2442.579 kb on + strand, within DvMF_1975at 2442.579 kb on + strand, within DvMF_1975at 2442.579 kb on + strand, within DvMF_1975at 2442.587 kb on - strand, within DvMF_1975at 2442.798 kb on + strand, within DvMF_1975at 2442.827 kb on + strand, within DvMF_1975at 2443.300 kb on + strand, within DvMF_1976at 2443.300 kb on + strand, within DvMF_1976at 2443.308 kb on - strand, within DvMF_1976at 2443.426 kb on + strand, within DvMF_1976at 2443.553 kb on - strand, within DvMF_1976at 2443.781 kb on - strand, within DvMF_1976at 2443.978 kb on + strand, within DvMF_1976at 2443.988 kb on - strand, within DvMF_1976at 2444.099 kb on - strand, within DvMF_1976at 2444.101 kb on - strand, within DvMF_1976at 2444.299 kb on + strand, within DvMF_1977at 2444.307 kb on - strand, within DvMF_1977at 2444.358 kb on + strand, within DvMF_1977at 2444.457 kb on - strand, within DvMF_1977at 2444.864 kb on - strandat 2444.874 kb on - strandat 2445.009 kb on + strandat 2445.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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2,442,579 + DvMF_1975 0.21 +0.4
2,442,579 + DvMF_1975 0.21 +0.4
2,442,579 + DvMF_1975 0.21 +1.2
2,442,587 - DvMF_1975 0.22 -0.3
2,442,798 + DvMF_1975 0.50 +1.0
2,442,827 + DvMF_1975 0.54 +0.6
2,443,300 + DvMF_1976 0.11 +0.5
2,443,300 + DvMF_1976 0.11 +1.3
2,443,308 - DvMF_1976 0.12 +0.7
2,443,426 + DvMF_1976 0.24 +0.4
2,443,553 - DvMF_1976 0.36 +0.7
2,443,781 - DvMF_1976 0.58 +1.0
2,443,978 + DvMF_1976 0.77 +0.6
2,443,988 - DvMF_1976 0.78 +2.0
2,444,099 - DvMF_1976 0.89 +0.4
2,444,101 - DvMF_1976 0.89 -0.3
2,444,299 + DvMF_1977 0.29 -0.0
2,444,307 - DvMF_1977 0.31 +0.7
2,444,358 + DvMF_1977 0.49 +0.5
2,444,457 - DvMF_1977 0.83 +0.6
2,444,864 - +0.6
2,444,874 - +0.4
2,445,009 + +0.4
2,445,017 - +0.6

Or see this region's nucleotide sequence