Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1909

Experiment: 8 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1908 and DvMF_1909 are separated by 263 nucleotidesDvMF_1909 and DvMF_1910 are separated by 25 nucleotidesDvMF_1910 and DvMF_1911 are separated by 174 nucleotides DvMF_1908: DvMF_1908 - glucose-1-phosphate cytidylyltransferase (RefSeq), at 2,352,430 to 2,353,212 _1908 DvMF_1909: DvMF_1909 - CDP-glucose 4,6-dehydratase (RefSeq), at 2,353,476 to 2,354,585 _1909 DvMF_1910: DvMF_1910 - polysaccharide biosynthesis domain-containing protein (RefSeq), at 2,354,611 to 2,355,060 _1910 DvMF_1911: DvMF_1911 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,355,235 to 2,356,368 _1911 Position (kb) 2353 2354 2355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2352.663 kb on + strand, within DvMF_1908at 2352.742 kb on + strand, within DvMF_1908at 2352.767 kb on - strand, within DvMF_1908at 2353.362 kb on - strandat 2353.418 kb on + strandat 2353.658 kb on - strand, within DvMF_1909at 2353.688 kb on + strand, within DvMF_1909at 2353.688 kb on + strand, within DvMF_1909at 2353.943 kb on - strand, within DvMF_1909at 2353.943 kb on - strand, within DvMF_1909at 2354.180 kb on + strand, within DvMF_1909at 2354.299 kb on + strand, within DvMF_1909at 2354.616 kb on - strandat 2355.096 kb on + strandat 2355.374 kb on + strand, within DvMF_1911

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
remove
2,352,663 + DvMF_1908 0.30 -1.8
2,352,742 + DvMF_1908 0.40 -3.3
2,352,767 - DvMF_1908 0.43 -2.7
2,353,362 - +0.1
2,353,418 + +0.4
2,353,658 - DvMF_1909 0.16 -1.9
2,353,688 + DvMF_1909 0.19 -4.6
2,353,688 + DvMF_1909 0.19 -3.8
2,353,943 - DvMF_1909 0.42 -4.1
2,353,943 - DvMF_1909 0.42 -3.1
2,354,180 + DvMF_1909 0.63 -3.3
2,354,299 + DvMF_1909 0.74 -1.6
2,354,616 - -0.5
2,355,096 + +0.9
2,355,374 + DvMF_1911 0.12 -2.8

Or see this region's nucleotide sequence