Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1905

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1904 and DvMF_1905 are separated by 212 nucleotidesDvMF_1905 and DvMF_1906 are separated by 222 nucleotides DvMF_1904: DvMF_1904 - hypothetical protein (RefSeq), at 2,343,324 to 2,345,327 _1904 DvMF_1905: DvMF_1905 - hypothetical protein (RefSeq), at 2,345,540 to 2,347,201 _1905 DvMF_1906: DvMF_1906 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,347,424 to 2,348,740 _1906 Position (kb) 2345 2346 2347 2348Strain fitness (log2 ratio) -1 0 1at 2345.308 kb on + strandat 2345.369 kb on - strandat 2345.532 kb on + strandat 2345.673 kb on + strandat 2345.764 kb on - strand, within DvMF_1905at 2345.844 kb on + strand, within DvMF_1905at 2345.862 kb on - strand, within DvMF_1905at 2346.051 kb on + strand, within DvMF_1905at 2346.418 kb on - strand, within DvMF_1905at 2346.499 kb on + strand, within DvMF_1905at 2346.613 kb on - strand, within DvMF_1905at 2346.696 kb on + strand, within DvMF_1905at 2346.696 kb on + strand, within DvMF_1905at 2346.740 kb on - strand, within DvMF_1905at 2347.415 kb on - strandat 2347.827 kb on - strand, within DvMF_1906

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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2,345,308 + +0.4
2,345,369 - +0.5
2,345,532 + +0.6
2,345,673 + +1.4
2,345,764 - DvMF_1905 0.13 +1.3
2,345,844 + DvMF_1905 0.18 +0.8
2,345,862 - DvMF_1905 0.19 +0.9
2,346,051 + DvMF_1905 0.31 +1.3
2,346,418 - DvMF_1905 0.53 +1.1
2,346,499 + DvMF_1905 0.58 +0.0
2,346,613 - DvMF_1905 0.65 +1.5
2,346,696 + DvMF_1905 0.70 +0.3
2,346,696 + DvMF_1905 0.70 +0.9
2,346,740 - DvMF_1905 0.72 +0.8
2,347,415 - +1.6
2,347,827 - DvMF_1906 0.31 -1.2

Or see this region's nucleotide sequence