Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1745

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1744 and DvMF_1745 are separated by 195 nucleotidesDvMF_1745 and DvMF_1746 overlap by 20 nucleotides DvMF_1744: DvMF_1744 - anthranilate phosphoribosyltransferase (RefSeq), at 2,131,190 to 2,132,206 _1744 DvMF_1745: DvMF_1745 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 2,132,402 to 2,132,980 _1745 DvMF_1746: DvMF_1746 - Anthranilate synthase (RefSeq), at 2,132,961 to 2,134,523 _1746 Position (kb) 2132 2133Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2131.496 kb on - strand, within DvMF_1744at 2131.611 kb on - strand, within DvMF_1744at 2131.828 kb on - strand, within DvMF_1744at 2131.897 kb on - strand, within DvMF_1744at 2132.406 kb on - strandat 2132.406 kb on - strandat 2132.472 kb on + strand, within DvMF_1745at 2132.505 kb on + strand, within DvMF_1745at 2132.505 kb on + strand, within DvMF_1745at 2132.513 kb on - strand, within DvMF_1745at 2132.513 kb on - strand, within DvMF_1745at 2132.697 kb on - strand, within DvMF_1745at 2132.740 kb on + strand, within DvMF_1745at 2132.746 kb on + strand, within DvMF_1745at 2132.754 kb on - strand, within DvMF_1745at 2132.821 kb on + strand, within DvMF_1745at 2133.156 kb on + strand, within DvMF_1746at 2133.198 kb on + strand, within DvMF_1746at 2133.386 kb on + strand, within DvMF_1746at 2133.544 kb on - strand, within DvMF_1746at 2133.727 kb on - strand, within DvMF_1746at 2133.774 kb on + strand, within DvMF_1746at 2133.788 kb on + strand, within DvMF_1746at 2133.851 kb on + strand, within DvMF_1746at 2133.859 kb on - strand, within DvMF_1746at 2133.938 kb on + strand, within DvMF_1746at 2133.948 kb on + strand, within DvMF_1746

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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2,131,496 - DvMF_1744 0.30 -2.6
2,131,611 - DvMF_1744 0.41 -2.7
2,131,828 - DvMF_1744 0.63 -2.1
2,131,897 - DvMF_1744 0.70 -2.5
2,132,406 - +0.6
2,132,406 - +0.8
2,132,472 + DvMF_1745 0.12 -2.0
2,132,505 + DvMF_1745 0.18 -0.2
2,132,505 + DvMF_1745 0.18 -2.2
2,132,513 - DvMF_1745 0.19 -4.2
2,132,513 - DvMF_1745 0.19 -2.8
2,132,697 - DvMF_1745 0.51 -1.8
2,132,740 + DvMF_1745 0.58 -2.4
2,132,746 + DvMF_1745 0.59 -2.8
2,132,754 - DvMF_1745 0.61 -0.6
2,132,821 + DvMF_1745 0.72 -0.8
2,133,156 + DvMF_1746 0.12 -2.9
2,133,198 + DvMF_1746 0.15 -1.1
2,133,386 + DvMF_1746 0.27 -3.0
2,133,544 - DvMF_1746 0.37 -1.7
2,133,727 - DvMF_1746 0.49 -3.0
2,133,774 + DvMF_1746 0.52 -2.0
2,133,788 + DvMF_1746 0.53 -4.2
2,133,851 + DvMF_1746 0.57 -2.6
2,133,859 - DvMF_1746 0.57 -2.2
2,133,938 + DvMF_1746 0.63 -1.6
2,133,948 + DvMF_1746 0.63 -2.6

Or see this region's nucleotide sequence