Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1604

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1603 and DvMF_1604 are separated by 33 nucleotidesDvMF_1604 and DvMF_1605 overlap by 4 nucleotides DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928 _1603 DvMF_1604: DvMF_1604 - proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq), at 1,974,962 to 1,976,521 _1604 DvMF_1605: DvMF_1605 - NADH dehydrogenase (quinone) (RefSeq), at 1,976,518 to 1,977,945 _1605 Position (kb) 1974 1975 1976 1977Strain fitness (log2 ratio) -1 0 1at 1974.154 kb on + strand, within DvMF_1603at 1974.334 kb on + strand, within DvMF_1603at 1974.342 kb on - strand, within DvMF_1603at 1974.387 kb on + strand, within DvMF_1603at 1974.441 kb on - strand, within DvMF_1603at 1974.568 kb on + strand, within DvMF_1603at 1974.749 kb on - strand, within DvMF_1603at 1974.806 kb on - strandat 1974.812 kb on + strandat 1974.857 kb on + strandat 1974.867 kb on + strandat 1975.392 kb on - strand, within DvMF_1604at 1975.602 kb on - strand, within DvMF_1604at 1975.895 kb on - strand, within DvMF_1604at 1976.143 kb on - strand, within DvMF_1604at 1976.528 kb on + strandat 1976.546 kb on - strandat 1976.620 kb on + strandat 1976.735 kb on + strand, within DvMF_1605at 1976.775 kb on + strand, within DvMF_1605at 1976.925 kb on - strand, within DvMF_1605at 1977.188 kb on + strand, within DvMF_1605at 1977.421 kb on + strand, within DvMF_1605at 1977.436 kb on + strand, within DvMF_1605at 1977.454 kb on + strand, within DvMF_1605at 1977.489 kb on + strand, within DvMF_1605

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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1,974,154 + DvMF_1603 0.57 -0.1
1,974,334 + DvMF_1603 0.67 -0.5
1,974,342 - DvMF_1603 0.67 -0.5
1,974,387 + DvMF_1603 0.70 -0.2
1,974,441 - DvMF_1603 0.73 -1.2
1,974,568 + DvMF_1603 0.80 -0.1
1,974,749 - DvMF_1603 0.90 -1.5
1,974,806 - -0.4
1,974,812 + -0.5
1,974,857 + -0.2
1,974,867 + +0.6
1,975,392 - DvMF_1604 0.28 -0.2
1,975,602 - DvMF_1604 0.41 -1.3
1,975,895 - DvMF_1604 0.60 +0.6
1,976,143 - DvMF_1604 0.76 +1.4
1,976,528 + -0.3
1,976,546 - -0.4
1,976,620 + -0.4
1,976,735 + DvMF_1605 0.15 -0.8
1,976,775 + DvMF_1605 0.18 +0.0
1,976,925 - DvMF_1605 0.29 -1.1
1,977,188 + DvMF_1605 0.47 -0.3
1,977,421 + DvMF_1605 0.63 -0.3
1,977,436 + DvMF_1605 0.64 -0.4
1,977,454 + DvMF_1605 0.66 -0.4
1,977,489 + DvMF_1605 0.68 +0.7

Or see this region's nucleotide sequence