Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1599

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1597 and DvMF_1598 are separated by 203 nucleotidesDvMF_1598 and DvMF_1599 are separated by 1 nucleotidesDvMF_1599 and DvMF_1600 overlap by 4 nucleotidesDvMF_1600 and DvMF_1601 overlap by 1 nucleotides DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744 _1597 DvMF_1598: DvMF_1598 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,969,948 to 1,970,571 _1598 DvMF_1599: DvMF_1599 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (RefSeq), at 1,970,573 to 1,971,079 _1599 DvMF_1600: DvMF_1600 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 1,971,076 to 1,971,390 _1600 DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889 _1601 Position (kb) 1970 1971 1972Strain fitness (log2 ratio) -1 0 1at 1969.661 kb on - strandat 1969.749 kb on + strandat 1969.941 kb on + strandat 1970.141 kb on - strand, within DvMF_1598at 1970.360 kb on - strand, within DvMF_1598at 1970.541 kb on - strandat 1970.588 kb on + strandat 1970.892 kb on - strand, within DvMF_1599at 1971.037 kb on + strandat 1971.042 kb on + strandat 1971.344 kb on + strand, within DvMF_1600at 1971.548 kb on - strand, within DvMF_1601at 1971.742 kb on + strand, within DvMF_1601at 1971.818 kb on - strand, within DvMF_1601at 1971.959 kb on - strand, within DvMF_1601at 1972.038 kb on + strand, within DvMF_1601at 1972.046 kb on - strand, within DvMF_1601at 1972.065 kb on + strand, within DvMF_1601

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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1,969,661 - -0.6
1,969,749 + +0.1
1,969,941 + +0.1
1,970,141 - DvMF_1598 0.31 -0.4
1,970,360 - DvMF_1598 0.66 -0.1
1,970,541 - +0.1
1,970,588 + -1.2
1,970,892 - DvMF_1599 0.63 -0.8
1,971,037 + +0.0
1,971,042 + +0.2
1,971,344 + DvMF_1600 0.85 +1.1
1,971,548 - DvMF_1601 0.11 -0.3
1,971,742 + DvMF_1601 0.23 -0.3
1,971,818 - DvMF_1601 0.29 +0.1
1,971,959 - DvMF_1601 0.38 -0.7
1,972,038 + DvMF_1601 0.43 -0.2
1,972,046 - DvMF_1601 0.44 -0.4
1,972,065 + DvMF_1601 0.45 +0.1

Or see this region's nucleotide sequence