Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1519

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1518 and DvMF_1519 overlap by 1 nucleotidesDvMF_1519 and DvMF_1520 are separated by 15 nucleotidesDvMF_1520 and DvMF_1521 are separated by 125 nucleotides DvMF_1518: DvMF_1518 - NADH dehydrogenase (quinone) (RefSeq), at 1,873,516 to 1,875,462 _1518 DvMF_1519: DvMF_1519 - respiratory-chain NADH dehydrogenase subunit 1 (RefSeq), at 1,875,462 to 1,876,310 _1519 DvMF_1520: DvMF_1520 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 1,876,326 to 1,876,799 _1520 DvMF_1521: DvMF_1521 - hypothetical protein (RefSeq), at 1,876,925 to 1,877,317 _1521 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -1 0 1at 1874.572 kb on - strand, within DvMF_1518at 1874.577 kb on + strand, within DvMF_1518at 1874.591 kb on + strand, within DvMF_1518at 1874.682 kb on + strand, within DvMF_1518at 1874.753 kb on + strand, within DvMF_1518at 1874.771 kb on - strand, within DvMF_1518at 1874.778 kb on - strand, within DvMF_1518at 1874.901 kb on + strand, within DvMF_1518at 1875.141 kb on - strand, within DvMF_1518at 1875.153 kb on - strand, within DvMF_1518at 1875.273 kb on + strandat 1875.637 kb on + strand, within DvMF_1519at 1875.674 kb on + strand, within DvMF_1519at 1875.682 kb on - strand, within DvMF_1519at 1875.684 kb on - strand, within DvMF_1519at 1876.125 kb on - strand, within DvMF_1519at 1876.221 kb on + strand, within DvMF_1519at 1876.320 kb on - strandat 1876.946 kb on - strandat 1876.946 kb on - strandat 1876.957 kb on + strandat 1876.987 kb on + strand, within DvMF_1521at 1877.116 kb on + strand, within DvMF_1521

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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1,874,572 - DvMF_1518 0.54 -0.8
1,874,577 + DvMF_1518 0.54 +0.0
1,874,591 + DvMF_1518 0.55 -0.1
1,874,682 + DvMF_1518 0.60 -0.4
1,874,753 + DvMF_1518 0.64 +0.0
1,874,771 - DvMF_1518 0.64 +0.3
1,874,778 - DvMF_1518 0.65 +0.7
1,874,901 + DvMF_1518 0.71 +0.2
1,875,141 - DvMF_1518 0.83 +0.6
1,875,153 - DvMF_1518 0.84 -0.4
1,875,273 + +0.3
1,875,637 + DvMF_1519 0.21 -0.7
1,875,674 + DvMF_1519 0.25 -0.2
1,875,682 - DvMF_1519 0.26 -0.2
1,875,684 - DvMF_1519 0.26 -0.8
1,876,125 - DvMF_1519 0.78 +0.1
1,876,221 + DvMF_1519 0.89 -0.7
1,876,320 - -0.7
1,876,946 - -0.5
1,876,946 - +0.0
1,876,957 + -0.3
1,876,987 + DvMF_1521 0.16 -0.4
1,877,116 + DvMF_1521 0.49 -0.0

Or see this region's nucleotide sequence