Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1479

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1478 and DvMF_1479 are separated by 103 nucleotidesDvMF_1479 and DvMF_1480 overlap by 1 nucleotidesDvMF_1480 and DvMF_1481 overlap by 8 nucleotides DvMF_1478: DvMF_1478 - Extracellular ligand-binding receptor (RefSeq), at 1,812,242 to 1,813,459 _1478 DvMF_1479: DvMF_1479 - transcriptional regulator, GntR family (RefSeq), at 1,813,563 to 1,814,333 _1479 DvMF_1480: DvMF_1480 - ABC transporter related (RefSeq), at 1,814,333 to 1,815,175 _1480 DvMF_1481: DvMF_1481 - ABC transporter related (RefSeq), at 1,815,168 to 1,815,947 _1481 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -1 0 1 2at 1812.762 kb on + strand, within DvMF_1478at 1813.202 kb on + strand, within DvMF_1478at 1813.205 kb on - strand, within DvMF_1478at 1813.489 kb on - strandat 1813.635 kb on + strandat 1813.706 kb on - strand, within DvMF_1479at 1813.812 kb on + strand, within DvMF_1479at 1814.195 kb on + strand, within DvMF_1479at 1814.314 kb on + strandat 1814.658 kb on - strand, within DvMF_1480at 1814.708 kb on + strand, within DvMF_1480at 1815.001 kb on - strand, within DvMF_1480at 1815.039 kb on + strand, within DvMF_1480at 1815.205 kb on - strandat 1815.218 kb on + strandat 1815.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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1,812,762 + DvMF_1478 0.43 +1.2
1,813,202 + DvMF_1478 0.79 +0.1
1,813,205 - DvMF_1478 0.79 +0.9
1,813,489 - +1.5
1,813,635 + +0.5
1,813,706 - DvMF_1479 0.19 -0.9
1,813,812 + DvMF_1479 0.32 +0.4
1,814,195 + DvMF_1479 0.82 -0.3
1,814,314 + +0.8
1,814,658 - DvMF_1480 0.39 +0.8
1,814,708 + DvMF_1480 0.44 +0.5
1,815,001 - DvMF_1480 0.79 +0.8
1,815,039 + DvMF_1480 0.84 +2.4
1,815,205 - +0.3
1,815,218 + +0.6
1,815,218 + +0.9

Or see this region's nucleotide sequence