Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1177

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1175 and DvMF_1176 overlap by 4 nucleotidesDvMF_1176 and DvMF_1177 overlap by 20 nucleotidesDvMF_1177 and DvMF_1178 are separated by 262 nucleotides DvMF_1175: DvMF_1175 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit (RefSeq), at 1,452,056 to 1,453,480 _1175 DvMF_1176: DvMF_1176 - extracellular solute-binding protein family 3 (RefSeq), at 1,453,477 to 1,454,415 _1176 DvMF_1177: DvMF_1177 - precorrin-4 C11-methyltransferase (RefSeq), at 1,454,396 to 1,455,313 _1177 DvMF_1178: DvMF_1178 - multicopper oxidase type 3 (RefSeq), at 1,455,576 to 1,457,303 _1178 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -2 -1 0 1at 1453.682 kb on + strand, within DvMF_1176at 1453.825 kb on + strand, within DvMF_1176at 1453.838 kb on + strand, within DvMF_1176at 1453.862 kb on + strand, within DvMF_1176at 1453.890 kb on - strand, within DvMF_1176at 1454.106 kb on - strand, within DvMF_1176at 1454.148 kb on - strand, within DvMF_1176at 1454.251 kb on + strand, within DvMF_1176at 1454.287 kb on - strand, within DvMF_1176at 1454.388 kb on + strandat 1454.521 kb on - strand, within DvMF_1177at 1454.591 kb on - strand, within DvMF_1177at 1454.617 kb on - strand, within DvMF_1177at 1454.964 kb on + strand, within DvMF_1177at 1455.271 kb on + strandat 1455.398 kb on - strandat 1455.516 kb on + strandat 1456.297 kb on + strand, within DvMF_1178

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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1,453,682 + DvMF_1176 0.22 +0.7
1,453,825 + DvMF_1176 0.37 +0.4
1,453,838 + DvMF_1176 0.38 -1.5
1,453,862 + DvMF_1176 0.41 +1.7
1,453,890 - DvMF_1176 0.44 +0.9
1,454,106 - DvMF_1176 0.67 -0.0
1,454,148 - DvMF_1176 0.71 +0.2
1,454,251 + DvMF_1176 0.82 +0.5
1,454,287 - DvMF_1176 0.86 +0.8
1,454,388 + +0.8
1,454,521 - DvMF_1177 0.14 -1.2
1,454,591 - DvMF_1177 0.21 +1.4
1,454,617 - DvMF_1177 0.24 -2.2
1,454,964 + DvMF_1177 0.62 -2.6
1,455,271 + +0.6
1,455,398 - +0.4
1,455,516 + +0.0
1,456,297 + DvMF_1178 0.42 +0.9

Or see this region's nucleotide sequence