Experiment: 8 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1112 and DvMF_1113 are separated by 77 nucleotides DvMF_1113 and DvMF_1114 are separated by 145 nucleotides
DvMF_1112: DvMF_1112 - hypothetical protein (RefSeq), at 1,361,478 to 1,362,383
_1112
DvMF_1113: DvMF_1113 - hypothetical protein (RefSeq), at 1,362,461 to 1,363,273
_1113
DvMF_1114: DvMF_1114 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,363,419 to 1,365,521
_1114
Position (kb)
1362
1363
1364 Strain fitness (log2 ratio)
-1
0
1 at 1361.591 kb on - strand, within DvMF_1112 at 1361.591 kb on - strand, within DvMF_1112 at 1361.899 kb on + strand, within DvMF_1112 at 1361.899 kb on + strand, within DvMF_1112 at 1361.907 kb on - strand, within DvMF_1112 at 1361.913 kb on - strand, within DvMF_1112 at 1362.088 kb on - strand, within DvMF_1112 at 1362.148 kb on - strand, within DvMF_1112 at 1362.537 kb on + strand at 1362.645 kb on + strand, within DvMF_1113 at 1362.981 kb on - strand, within DvMF_1113 at 1362.981 kb on - strand, within DvMF_1113 at 1363.029 kb on - strand, within DvMF_1113 at 1363.093 kb on - strand, within DvMF_1113 at 1363.112 kb on + strand, within DvMF_1113 at 1363.290 kb on + strand at 1363.298 kb on - strand at 1363.343 kb on - strand at 1363.370 kb on + strand at 1363.396 kb on - strand at 1363.465 kb on + strand at 1363.752 kb on + strand, within DvMF_1114 at 1363.774 kb on + strand, within DvMF_1114 at 1363.848 kb on + strand, within DvMF_1114 at 1363.989 kb on - strand, within DvMF_1114
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 30C remove 1,361,591 - DvMF_1112 0.12 +0.0 1,361,591 - DvMF_1112 0.12 +1.4 1,361,899 + DvMF_1112 0.46 +0.7 1,361,899 + DvMF_1112 0.46 +0.3 1,361,907 - DvMF_1112 0.47 -0.0 1,361,913 - DvMF_1112 0.48 +0.4 1,362,088 - DvMF_1112 0.67 -0.1 1,362,148 - DvMF_1112 0.74 +0.2 1,362,537 + +0.4 1,362,645 + DvMF_1113 0.23 +0.1 1,362,981 - DvMF_1113 0.64 +0.4 1,362,981 - DvMF_1113 0.64 +0.1 1,363,029 - DvMF_1113 0.70 +0.7 1,363,093 - DvMF_1113 0.78 +0.5 1,363,112 + DvMF_1113 0.80 +0.3 1,363,290 + -1.2 1,363,298 - +0.1 1,363,343 - -0.0 1,363,370 + +0.6 1,363,396 - +1.4 1,363,465 + +0.0 1,363,752 + DvMF_1114 0.16 +1.5 1,363,774 + DvMF_1114 0.17 +1.2 1,363,848 + DvMF_1114 0.20 +0.5 1,363,989 - DvMF_1114 0.27 +0.3
Or see this region's nucleotide sequence