Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0800

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiH and thiG are separated by 119 nucleotidesthiG and DvMF_0801 overlap by 1 nucleotidesDvMF_0801 and DvMF_0802 are separated by 433 nucleotides DvMF_0799: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 963,303 to 964,547 thiH DvMF_0800: thiG - thiazole synthase (RefSeq), at 964,667 to 965,467 thiG DvMF_0801: DvMF_0801 - thiamine biosynthesis protein ThiS (RefSeq), at 965,467 to 965,667 _0801 DvMF_0802: DvMF_0802 - ABC transporter related (RefSeq), at 966,101 to 967,405 _0802 Position (kb) 964 965 966Strain fitness (log2 ratio) -1 0 1at 963.734 kb on + strand, within thiHat 963.885 kb on + strand, within thiHat 963.893 kb on - strand, within thiHat 963.967 kb on + strand, within thiHat 963.980 kb on + strand, within thiHat 964.032 kb on - strand, within thiHat 964.065 kb on - strand, within thiHat 964.590 kb on - strandat 964.801 kb on - strand, within thiGat 964.877 kb on - strand, within thiGat 965.230 kb on + strand, within thiGat 965.238 kb on + strand, within thiGat 965.297 kb on + strand, within thiGat 965.317 kb on + strand, within thiGat 965.348 kb on - strand, within thiGat 965.356 kb on + strand, within thiGat 965.356 kb on + strand, within thiGat 965.493 kb on - strand, within DvMF_0801at 965.525 kb on + strand, within DvMF_0801at 965.542 kb on - strand, within DvMF_0801at 965.997 kb on + strandat 966.383 kb on + strand, within DvMF_0802

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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963,734 + thiH DvMF_0799 0.35 +0.1
963,885 + thiH DvMF_0799 0.47 +0.3
963,893 - thiH DvMF_0799 0.47 -1.1
963,967 + thiH DvMF_0799 0.53 -1.1
963,980 + thiH DvMF_0799 0.54 -0.0
964,032 - thiH DvMF_0799 0.59 -0.2
964,065 - thiH DvMF_0799 0.61 -0.3
964,590 - +0.5
964,801 - thiG DvMF_0800 0.17 -0.6
964,877 - thiG DvMF_0800 0.26 +0.0
965,230 + thiG DvMF_0800 0.70 -0.0
965,238 + thiG DvMF_0800 0.71 +0.0
965,297 + thiG DvMF_0800 0.79 -0.2
965,317 + thiG DvMF_0800 0.81 -0.5
965,348 - thiG DvMF_0800 0.85 -0.4
965,356 + thiG DvMF_0800 0.86 -0.2
965,356 + thiG DvMF_0800 0.86 -0.2
965,493 - DvMF_0801 0.13 +0.3
965,525 + DvMF_0801 0.29 -0.7
965,542 - DvMF_0801 0.37 -0.0
965,997 + +1.5
966,383 + DvMF_0802 0.22 +0.4

Or see this region's nucleotide sequence